Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1419

Experiment: 14 days starvation 37C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1419 and DvMF_1420 are separated by 37 nucleotides DvMF_1419: DvMF_1419 - signal transduction histidine kinase (RefSeq), at 1,735,325 to 1,736,980 _1419 DvMF_1420: DvMF_1420 - MltA domain protein (RefSeq), at 1,737,018 to 1,738,172 _1420 Position (kb) 1735 1736 1737Strain fitness (log2 ratio) -3 -2 -1 0 1at 1734.364 kb on + strandat 1734.388 kb on - strandat 1734.474 kb on + strandat 1734.504 kb on - strandat 1734.511 kb on - strandat 1735.198 kb on + strandat 1735.384 kb on + strandat 1735.384 kb on + strandat 1735.862 kb on + strand, within DvMF_1419at 1735.880 kb on + strand, within DvMF_1419at 1735.888 kb on - strand, within DvMF_1419at 1736.078 kb on - strand, within DvMF_1419at 1736.759 kb on + strand, within DvMF_1419at 1736.882 kb on - strandat 1737.016 kb on + strandat 1737.024 kb on - strandat 1737.108 kb on - strandat 1737.155 kb on + strand, within DvMF_1420at 1737.155 kb on + strand, within DvMF_1420at 1737.155 kb on + strand, within DvMF_1420at 1737.157 kb on - strand, within DvMF_1420at 1737.160 kb on + strand, within DvMF_1420at 1737.317 kb on - strand, within DvMF_1420at 1737.427 kb on + strand, within DvMF_1420at 1737.487 kb on + strand, within DvMF_1420at 1737.659 kb on + strand, within DvMF_1420at 1737.667 kb on - strand, within DvMF_1420at 1737.685 kb on + strand, within DvMF_1420at 1737.815 kb on - strand, within DvMF_1420at 1737.828 kb on + strand, within DvMF_1420at 1737.871 kb on - strand, within DvMF_1420

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Per-strain Table

Position Strand Gene LocusTag Fraction 14 days starvation 37C
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1,734,364 + -0.5
1,734,388 - -1.9
1,734,474 + -1.2
1,734,504 - -2.2
1,734,511 - +0.8
1,735,198 + -2.3
1,735,384 + -0.6
1,735,384 + -0.3
1,735,862 + DvMF_1419 0.32 -0.4
1,735,880 + DvMF_1419 0.34 -0.2
1,735,888 - DvMF_1419 0.34 -2.0
1,736,078 - DvMF_1419 0.45 -2.0
1,736,759 + DvMF_1419 0.87 -0.8
1,736,882 - -1.1
1,737,016 + -0.1
1,737,024 - -0.3
1,737,108 - +0.2
1,737,155 + DvMF_1420 0.12 -1.2
1,737,155 + DvMF_1420 0.12 -3.5
1,737,155 + DvMF_1420 0.12 -0.5
1,737,157 - DvMF_1420 0.12 -2.3
1,737,160 + DvMF_1420 0.12 +0.2
1,737,317 - DvMF_1420 0.26 -1.1
1,737,427 + DvMF_1420 0.35 -0.7
1,737,487 + DvMF_1420 0.41 +0.2
1,737,659 + DvMF_1420 0.55 -2.7
1,737,667 - DvMF_1420 0.56 -1.1
1,737,685 + DvMF_1420 0.58 -0.5
1,737,815 - DvMF_1420 0.69 +0.5
1,737,828 + DvMF_1420 0.70 -0.0
1,737,871 - DvMF_1420 0.74 -0.1

Or see this region's nucleotide sequence