Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1207

Experiment: 14 days starvation 37C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1206 and DvMF_1207 are separated by 23 nucleotidesDvMF_1207 and DvMF_1208 are separated by 196 nucleotides DvMF_1206: DvMF_1206 - hypothetical protein (RefSeq), at 1,485,341 to 1,485,937 _1206 DvMF_1207: DvMF_1207 - transcriptional regulator, ArsR family (RefSeq), at 1,485,961 to 1,486,482 _1207 DvMF_1208: DvMF_1208 - CheW protein (RefSeq), at 1,486,679 to 1,487,218 _1208 Position (kb) 1485 1486 1487Strain fitness (log2 ratio) -2 -1 0 1at 1485.050 kb on + strandat 1485.646 kb on + strand, within DvMF_1206at 1485.659 kb on - strand, within DvMF_1206at 1486.679 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 14 days starvation 37C
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1,485,050 + -1.3
1,485,646 + DvMF_1206 0.51 -1.9
1,485,659 - DvMF_1206 0.53 -1.3
1,486,679 - -0.8

Or see this region's nucleotide sequence