Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1064

Experiment: 14 days starvation 37C

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_1062 and DvMF_1063 are separated by 90 nucleotidesDvMF_1063 and DvMF_1064 are separated by 1 nucleotidesDvMF_1064 and DvMF_1065 are separated by 164 nucleotides DvMF_1062: DvMF_1062 - Tail Collar domain protein (RefSeq), at 1,302,815 to 1,304,407 _1062 DvMF_1063: DvMF_1063 - hypothetical protein (RefSeq), at 1,304,498 to 1,305,007 _1063 DvMF_1064: DvMF_1064 - hypothetical protein (RefSeq), at 1,305,009 to 1,305,587 _1064 DvMF_1065: DvMF_1065 - hypothetical protein (RefSeq), at 1,305,752 to 1,307,830 _1065 Position (kb) 1305 1306Strain fitness (log2 ratio) -3 -2 -1 0 1at 1304.118 kb on + strand, within DvMF_1062at 1304.126 kb on - strand, within DvMF_1062at 1304.148 kb on + strand, within DvMF_1062at 1304.267 kb on + strandat 1304.275 kb on - strandat 1304.370 kb on + strandat 1304.480 kb on + strandat 1304.493 kb on - strandat 1304.522 kb on + strandat 1304.558 kb on + strand, within DvMF_1063at 1304.583 kb on - strand, within DvMF_1063at 1304.618 kb on - strand, within DvMF_1063at 1304.840 kb on - strand, within DvMF_1063at 1304.950 kb on + strand, within DvMF_1063at 1305.084 kb on - strand, within DvMF_1064at 1305.350 kb on - strand, within DvMF_1064at 1305.434 kb on + strand, within DvMF_1064at 1305.485 kb on - strand, within DvMF_1064at 1305.717 kb on - strandat 1305.838 kb on + strandat 1305.893 kb on + strandat 1305.918 kb on + strandat 1305.931 kb on - strandat 1305.968 kb on - strand, within DvMF_1065at 1306.082 kb on + strand, within DvMF_1065at 1306.408 kb on + strand, within DvMF_1065at 1306.454 kb on - strand, within DvMF_1065at 1306.479 kb on - strand, within DvMF_1065at 1306.479 kb on - strand, within DvMF_1065

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 14 days starvation 37C
remove
1,304,118 + DvMF_1062 0.82 -0.7
1,304,126 - DvMF_1062 0.82 -3.0
1,304,148 + DvMF_1062 0.84 -0.7
1,304,267 + -1.2
1,304,275 - -0.7
1,304,370 + -1.0
1,304,480 + -1.6
1,304,493 - -0.1
1,304,522 + -2.1
1,304,558 + DvMF_1063 0.12 -3.7
1,304,583 - DvMF_1063 0.17 -1.0
1,304,618 - DvMF_1063 0.24 -0.7
1,304,840 - DvMF_1063 0.67 -2.3
1,304,950 + DvMF_1063 0.89 -0.7
1,305,084 - DvMF_1064 0.13 -3.1
1,305,350 - DvMF_1064 0.59 -0.2
1,305,434 + DvMF_1064 0.73 -0.9
1,305,485 - DvMF_1064 0.82 +0.1
1,305,717 - -2.2
1,305,838 + -0.8
1,305,893 + +0.2
1,305,918 + -0.6
1,305,931 - -0.4
1,305,968 - DvMF_1065 0.10 -2.4
1,306,082 + DvMF_1065 0.16 -0.6
1,306,408 + DvMF_1065 0.32 -0.2
1,306,454 - DvMF_1065 0.34 -2.8
1,306,479 - DvMF_1065 0.35 -2.3
1,306,479 - DvMF_1065 0.35 -0.5

Or see this region's nucleotide sequence