Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0886

Experiment: 14 days starvation 37C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0885 and trmE are separated by 128 nucleotidestrmE and DvMF_0887 are separated by 185 nucleotides DvMF_0885: DvMF_0885 - nitrite and sulphite reductase 4Fe-4S region (RefSeq), at 1,068,291 to 1,069,094 _0885 DvMF_0886: trmE - tRNA modification GTPase TrmE (RefSeq), at 1,069,223 to 1,070,659 trmE DvMF_0887: DvMF_0887 - single-stranded nucleic acid binding R3H domain protein (RefSeq), at 1,070,845 to 1,072,341 _0887 Position (kb) 1069 1070 1071Strain fitness (log2 ratio) -3 -2 -1 0 1at 1068.486 kb on - strand, within DvMF_0885at 1068.498 kb on - strand, within DvMF_0885at 1069.040 kb on + strandat 1069.181 kb on + strandat 1069.181 kb on + strandat 1070.249 kb on + strand, within trmEat 1070.276 kb on - strand, within trmEat 1070.509 kb on - strand, within trmEat 1070.780 kb on - strandat 1071.036 kb on + strand, within DvMF_0887at 1071.488 kb on - strand, within DvMF_0887at 1071.594 kb on - strand, within DvMF_0887

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Per-strain Table

Position Strand Gene LocusTag Fraction 14 days starvation 37C
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1,068,486 - DvMF_0885 0.24 -1.8
1,068,498 - DvMF_0885 0.26 -1.1
1,069,040 + -1.5
1,069,181 + -0.6
1,069,181 + -1.0
1,070,249 + trmE DvMF_0886 0.71 -1.1
1,070,276 - trmE DvMF_0886 0.73 +0.9
1,070,509 - trmE DvMF_0886 0.89 +0.1
1,070,780 - -1.1
1,071,036 + DvMF_0887 0.13 -0.6
1,071,488 - DvMF_0887 0.43 -1.4
1,071,594 - DvMF_0887 0.50 -2.9

Or see this region's nucleotide sequence