Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0847

Experiment: 14 days starvation 37C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0846 and DvMF_0847 are separated by 438 nucleotidesDvMF_0847 and DvMF_0848 are separated by 136 nucleotides DvMF_0846: DvMF_0846 - hypothetical protein (RefSeq), at 1,021,732 to 1,024,080 _0846 DvMF_0847: DvMF_0847 - hypothetical protein (RefSeq), at 1,024,519 to 1,024,737 _0847 DvMF_0848: DvMF_0848 - glucose inhibited division protein (RefSeq), at 1,024,874 to 1,025,650 _0848 Position (kb) 1024 1025Strain fitness (log2 ratio) -3 -2 -1 0 1at 1023.829 kb on + strand, within DvMF_0846at 1023.841 kb on + strand, within DvMF_0846at 1023.865 kb on + strandat 1024.200 kb on + strandat 1024.250 kb on - strandat 1024.302 kb on + strandat 1024.312 kb on + strandat 1024.646 kb on - strand, within DvMF_0847at 1025.018 kb on + strand, within DvMF_0848at 1025.058 kb on + strand, within DvMF_0848at 1025.158 kb on + strand, within DvMF_0848at 1025.260 kb on - strand, within DvMF_0848at 1025.301 kb on - strand, within DvMF_0848at 1025.653 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 14 days starvation 37C
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1,023,829 + DvMF_0846 0.89 -3.0
1,023,841 + DvMF_0846 0.90 -0.5
1,023,865 + -2.2
1,024,200 + -1.2
1,024,250 - -2.5
1,024,302 + +0.2
1,024,312 + -1.3
1,024,646 - DvMF_0847 0.58 -1.3
1,025,018 + DvMF_0848 0.19 -0.7
1,025,058 + DvMF_0848 0.24 -2.0
1,025,158 + DvMF_0848 0.37 +0.2
1,025,260 - DvMF_0848 0.50 +0.1
1,025,301 - DvMF_0848 0.55 -2.5
1,025,653 - -2.1

Or see this region's nucleotide sequence