Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0841

Experiment: 14 days starvation 37C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0840 and DvMF_0841 are separated by 75 nucleotidesDvMF_0841 and DvMF_0842 are separated by 165 nucleotidesDvMF_0842 and DvMF_0843 are separated by 154 nucleotides DvMF_0840: DvMF_0840 - glycogen branching enzyme (RefSeq), at 1,014,472 to 1,016,403 _0840 DvMF_0841: DvMF_0841 - glycogen/starch synthase, ADP-glucose type (RefSeq), at 1,016,479 to 1,017,945 _0841 DvMF_0842: DvMF_0842 - NUDIX hydrolase (RefSeq), at 1,018,111 to 1,018,641 _0842 DvMF_0843: DvMF_0843 - glycosyl transferase family 9 (RefSeq), at 1,018,796 to 1,020,058 _0843 Position (kb) 1016 1017 1018Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 1015.502 kb on - strand, within DvMF_0840at 1015.509 kb on + strand, within DvMF_0840at 1015.530 kb on + strand, within DvMF_0840at 1015.733 kb on + strand, within DvMF_0840at 1015.765 kb on - strand, within DvMF_0840at 1015.833 kb on + strand, within DvMF_0840at 1016.069 kb on - strand, within DvMF_0840at 1016.296 kb on - strandat 1016.338 kb on + strandat 1016.463 kb on - strandat 1016.670 kb on - strand, within DvMF_0841at 1016.942 kb on - strand, within DvMF_0841at 1016.951 kb on - strand, within DvMF_0841at 1017.117 kb on - strand, within DvMF_0841at 1017.397 kb on + strand, within DvMF_0841at 1017.760 kb on - strand, within DvMF_0841at 1017.860 kb on - strandat 1017.888 kb on - strandat 1018.190 kb on + strand, within DvMF_0842at 1018.191 kb on - strand, within DvMF_0842at 1018.217 kb on + strand, within DvMF_0842at 1018.337 kb on + strand, within DvMF_0842at 1018.345 kb on - strand, within DvMF_0842at 1018.353 kb on + strand, within DvMF_0842at 1018.430 kb on - strand, within DvMF_0842at 1018.574 kb on - strand, within DvMF_0842at 1018.830 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 14 days starvation 37C
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1,015,502 - DvMF_0840 0.53 -5.8
1,015,509 + DvMF_0840 0.54 -4.2
1,015,530 + DvMF_0840 0.55 -2.3
1,015,733 + DvMF_0840 0.65 -1.8
1,015,765 - DvMF_0840 0.67 -2.6
1,015,833 + DvMF_0840 0.70 -3.3
1,016,069 - DvMF_0840 0.83 -4.2
1,016,296 - -5.4
1,016,338 + -3.0
1,016,463 - +1.5
1,016,670 - DvMF_0841 0.13 -1.6
1,016,942 - DvMF_0841 0.32 -0.4
1,016,951 - DvMF_0841 0.32 -1.4
1,017,117 - DvMF_0841 0.43 -0.2
1,017,397 + DvMF_0841 0.63 -2.5
1,017,760 - DvMF_0841 0.87 -2.6
1,017,860 - -1.4
1,017,888 - -0.3
1,018,190 + DvMF_0842 0.15 -0.9
1,018,191 - DvMF_0842 0.15 -0.7
1,018,217 + DvMF_0842 0.20 -0.6
1,018,337 + DvMF_0842 0.43 -4.0
1,018,345 - DvMF_0842 0.44 -0.6
1,018,353 + DvMF_0842 0.46 -2.9
1,018,430 - DvMF_0842 0.60 -0.6
1,018,574 - DvMF_0842 0.87 -0.8
1,018,830 - -0.6

Or see this region's nucleotide sequence