Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0839

Experiment: 14 days starvation 37C

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_0838 and DvMF_0839 are separated by 279 nucleotidesDvMF_0839 and DvMF_0840 are separated by 195 nucleotides DvMF_0838: DvMF_0838 - hypothetical protein (RefSeq), at 1,012,255 to 1,013,007 _0838 DvMF_0839: DvMF_0839 - Asparaginase (RefSeq), at 1,013,287 to 1,014,276 _0839 DvMF_0840: DvMF_0840 - glycogen branching enzyme (RefSeq), at 1,014,472 to 1,016,403 _0840 Position (kb) 1013 1014 1015Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 1012.365 kb on - strand, within DvMF_0838at 1012.635 kb on + strand, within DvMF_0838at 1012.933 kb on - strandat 1013.331 kb on + strandat 1013.338 kb on + strandat 1014.018 kb on + strand, within DvMF_0839at 1014.065 kb on + strand, within DvMF_0839at 1014.080 kb on - strand, within DvMF_0839at 1014.133 kb on - strand, within DvMF_0839at 1014.698 kb on - strand, within DvMF_0840at 1014.893 kb on + strand, within DvMF_0840at 1014.893 kb on + strand, within DvMF_0840at 1015.237 kb on + strand, within DvMF_0840

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 14 days starvation 37C
remove
1,012,365 - DvMF_0838 0.15 -2.4
1,012,635 + DvMF_0838 0.50 -0.5
1,012,933 - -0.2
1,013,331 + -0.2
1,013,338 + -0.6
1,014,018 + DvMF_0839 0.74 +0.3
1,014,065 + DvMF_0839 0.79 -0.1
1,014,080 - DvMF_0839 0.80 -2.0
1,014,133 - DvMF_0839 0.85 +1.0
1,014,698 - DvMF_0840 0.12 -1.7
1,014,893 + DvMF_0840 0.22 -3.3
1,014,893 + DvMF_0840 0.22 -5.0
1,015,237 + DvMF_0840 0.40 -3.0

Or see this region's nucleotide sequence