Experiment: 14 days starvation 37C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0723 and DvMF_0724 overlap by 1 nucleotides DvMF_0724 and DvMF_0725 overlap by 4 nucleotides DvMF_0725 and DvMF_0726 are separated by 13 nucleotides DvMF_0726 and DvMF_0727 are separated by 1 nucleotides DvMF_0727 and DvMF_0728 overlap by 4 nucleotides
DvMF_0723: DvMF_0723 - Lytic transglycosylase catalytic (RefSeq), at 873,212 to 874,000
_0723
DvMF_0724: DvMF_0724 - hypothetical protein (RefSeq), at 874,000 to 874,695
_0724
DvMF_0725: DvMF_0725 - hypothetical protein (RefSeq), at 874,692 to 874,958
_0725
DvMF_0726: DvMF_0726 - hypothetical protein (RefSeq), at 874,972 to 875,187
_0726
DvMF_0727: DvMF_0727 - Protein of unknown function DUF1804 (RefSeq), at 875,189 to 875,695
_0727
DvMF_0728: DvMF_0728 - phage uncharacterized protein (RefSeq), at 875,692 to 877,368
_0728
Position (kb) 874
875 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 873.714 kb on + strand, within DvMF_0723 at 873.807 kb on + strand, within DvMF_0723 at 874.183 kb on + strand, within DvMF_0724 at 874.333 kb on + strand, within DvMF_0724 at 874.391 kb on - strand, within DvMF_0724 at 874.640 kb on + strand at 874.659 kb on + strand at 874.738 kb on - strand, within DvMF_0725 at 874.761 kb on + strand, within DvMF_0725 at 875.181 kb on - strand at 875.183 kb on - strand at 875.207 kb on + strand at 875.236 kb on - strand at 875.314 kb on + strand, within DvMF_0727 at 875.422 kb on + strand, within DvMF_0727 at 875.422 kb on + strand, within DvMF_0727
Per-strain Table
Position Strand Gene LocusTag Fraction 14 days starvation 37C remove 873,714 + DvMF_0723 0.64 -1.3 873,807 + DvMF_0723 0.75 +1.3 874,183 + DvMF_0724 0.26 -0.5 874,333 + DvMF_0724 0.48 -0.2 874,391 - DvMF_0724 0.56 -0.5 874,640 + -2.9 874,659 + -1.5 874,738 - DvMF_0725 0.17 -2.5 874,761 + DvMF_0725 0.26 -1.5 875,181 - -1.4 875,183 - +0.6 875,207 + -0.5 875,236 - -0.1 875,314 + DvMF_0727 0.25 -1.2 875,422 + DvMF_0727 0.46 -2.4 875,422 + DvMF_0727 0.46 +0.1
Or see this region's nucleotide sequence