Experiment: 14 days starvation 37C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0594 and DvMF_0595 are separated by 369 nucleotides DvMF_0595 and DvMF_0596 overlap by 4 nucleotides DvMF_0596 and DvMF_0597 overlap by 4 nucleotides
DvMF_0594: DvMF_0594 - intracellular protease, PfpI family (RefSeq), at 705,892 to 706,416
_0594
DvMF_0595: DvMF_0595 - phosphonate ABC transporter, inner membrane subunit (RefSeq), at 706,786 to 707,580
_0595
DvMF_0596: DvMF_0596 - phosphonate ABC transporter, inner membrane subunit (RefSeq), at 707,577 to 708,365
_0596
DvMF_0597: DvMF_0597 - phosphonate ABC transporter, ATPase subunit (RefSeq), at 708,362 to 709,174
_0597
Position (kb) 706
707
708 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 706.015 kb on - strand, within DvMF_0594 at 706.020 kb on - strand, within DvMF_0594 at 706.293 kb on - strand, within DvMF_0594 at 706.418 kb on + strand at 706.426 kb on - strand at 706.544 kb on + strand at 706.756 kb on - strand at 707.198 kb on + strand, within DvMF_0595 at 707.243 kb on - strand, within DvMF_0595 at 707.303 kb on + strand, within DvMF_0595 at 707.322 kb on - strand, within DvMF_0595 at 707.436 kb on + strand, within DvMF_0595 at 707.563 kb on + strand at 707.578 kb on + strand at 707.733 kb on - strand, within DvMF_0596 at 707.895 kb on + strand, within DvMF_0596 at 708.290 kb on - strand at 708.401 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 14 days starvation 37C remove 706,015 - DvMF_0594 0.23 -1.6 706,020 - DvMF_0594 0.24 -2.5 706,293 - DvMF_0594 0.76 -1.0 706,418 + -2.3 706,426 - -0.1 706,544 + -2.8 706,756 - -2.5 707,198 + DvMF_0595 0.52 -1.1 707,243 - DvMF_0595 0.57 -0.4 707,303 + DvMF_0595 0.65 +0.5 707,322 - DvMF_0595 0.67 +0.2 707,436 + DvMF_0595 0.82 -0.0 707,563 + -2.6 707,578 + -1.6 707,733 - DvMF_0596 0.20 -0.3 707,895 + DvMF_0596 0.40 -0.9 708,290 - -0.4 708,401 - -1.3
Or see this region's nucleotide sequence