Experiment: 14 days starvation 37C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0339 and DvMF_0340 are separated by 365 nucleotides DvMF_0340 and DvMF_0341 are separated by 192 nucleotides
DvMF_0339: DvMF_0339 - recombination factor protein RarA (RefSeq), at 395,783 to 397,009
_0339
DvMF_0340: DvMF_0340 - 16S ribosomal RNA methyltransferase RsmE (RefSeq), at 397,375 to 398,094
_0340
DvMF_0341: DvMF_0341 - glycine cleavage system T protein (RefSeq), at 398,287 to 399,375
_0341
Position (kb) 397
398
399 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 396.455 kb on + strand, within DvMF_0339 at 396.883 kb on + strand, within DvMF_0339 at 396.974 kb on - strand at 397.082 kb on - strand at 397.238 kb on + strand at 397.399 kb on + strand at 397.523 kb on - strand, within DvMF_0340 at 398.020 kb on - strand, within DvMF_0340 at 398.049 kb on + strand at 398.101 kb on + strand at 398.220 kb on + strand at 398.293 kb on - strand at 398.312 kb on - strand at 398.316 kb on + strand at 398.426 kb on + strand, within DvMF_0341 at 398.619 kb on - strand, within DvMF_0341 at 398.844 kb on - strand, within DvMF_0341 at 398.871 kb on + strand, within DvMF_0341 at 398.916 kb on + strand, within DvMF_0341 at 398.924 kb on - strand, within DvMF_0341 at 398.924 kb on - strand, within DvMF_0341 at 398.976 kb on - strand, within DvMF_0341 at 399.015 kb on - strand, within DvMF_0341 at 399.072 kb on - strand, within DvMF_0341
Per-strain Table
Position Strand Gene LocusTag Fraction 14 days starvation 37C remove 396,455 + DvMF_0339 0.55 -2.0 396,883 + DvMF_0339 0.90 +0.3 396,974 - -1.5 397,082 - -2.5 397,238 + -1.0 397,399 + +0.1 397,523 - DvMF_0340 0.21 -0.3 398,020 - DvMF_0340 0.90 +0.4 398,049 + -0.9 398,101 + -0.6 398,220 + -2.4 398,293 - +0.3 398,312 - -0.2 398,316 + -2.1 398,426 + DvMF_0341 0.13 -3.8 398,619 - DvMF_0341 0.30 -0.9 398,844 - DvMF_0341 0.51 -1.8 398,871 + DvMF_0341 0.54 -0.6 398,916 + DvMF_0341 0.58 -1.5 398,924 - DvMF_0341 0.58 -1.5 398,924 - DvMF_0341 0.58 -3.0 398,976 - DvMF_0341 0.63 -1.2 399,015 - DvMF_0341 0.67 -0.4 399,072 - DvMF_0341 0.72 -1.0
Or see this region's nucleotide sequence