Experiment: 14 days starvation 37C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0212 and DvMF_0213 are separated by 433 nucleotides DvMF_0213 and DvMF_0214 overlap by 4 nucleotides DvMF_0214 and DvMF_0215 are separated by 29 nucleotides
DvMF_0212: DvMF_0212 - hypothetical protein (RefSeq), at 235,664 to 239,317
_0212
DvMF_0213: DvMF_0213 - multi-sensor signal transduction histidine kinase (RefSeq), at 239,751 to 241,919
_0213
DvMF_0214: DvMF_0214 - no description, at 241,916 to 241,990
_0214
DvMF_0215: DvMF_0215 - two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq), at 242,020 to 243,606
_0215
Position (kb) 239
240
241
242 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4
5
6 at 238.760 kb on + strand, within DvMF_0212 at 238.908 kb on + strand, within DvMF_0212 at 238.926 kb on - strand, within DvMF_0212 at 239.034 kb on - strand at 239.039 kb on - strand at 239.777 kb on + strand at 239.884 kb on + strand at 239.970 kb on - strand, within DvMF_0213 at 240.099 kb on + strand, within DvMF_0213 at 240.243 kb on - strand, within DvMF_0213 at 240.263 kb on - strand, within DvMF_0213 at 240.309 kb on - strand, within DvMF_0213 at 240.435 kb on - strand, within DvMF_0213 at 240.482 kb on + strand, within DvMF_0213 at 240.608 kb on + strand, within DvMF_0213 at 240.666 kb on - strand, within DvMF_0213 at 241.087 kb on + strand, within DvMF_0213 at 241.135 kb on + strand, within DvMF_0213 at 241.218 kb on - strand, within DvMF_0213 at 241.296 kb on + strand, within DvMF_0213 at 241.304 kb on - strand, within DvMF_0213 at 241.304 kb on - strand, within DvMF_0213 at 241.350 kb on - strand, within DvMF_0213 at 241.666 kb on + strand, within DvMF_0213 at 241.673 kb on - strand, within DvMF_0213 at 241.745 kb on + strand at 242.151 kb on - strand at 242.229 kb on + strand, within DvMF_0215 at 242.488 kb on - strand, within DvMF_0215 at 242.523 kb on - strand, within DvMF_0215 at 242.620 kb on + strand, within DvMF_0215 at 242.623 kb on - strand, within DvMF_0215 at 242.623 kb on - strand, within DvMF_0215 at 242.661 kb on + strand, within DvMF_0215 at 242.676 kb on + strand, within DvMF_0215 at 242.706 kb on + strand, within DvMF_0215 at 242.791 kb on + strand, within DvMF_0215 at 242.797 kb on - strand, within DvMF_0215
Per-strain Table
Position Strand Gene LocusTag Fraction 14 days starvation 37C remove 238,760 + DvMF_0212 0.85 -0.8 238,908 + DvMF_0212 0.89 -1.6 238,926 - DvMF_0212 0.89 -1.0 239,034 - -1.6 239,039 - -1.1 239,777 + +3.8 239,884 + +4.7 239,970 - DvMF_0213 0.10 -2.6 240,099 + DvMF_0213 0.16 +1.3 240,243 - DvMF_0213 0.23 +3.1 240,263 - DvMF_0213 0.24 +3.8 240,309 - DvMF_0213 0.26 +3.7 240,435 - DvMF_0213 0.32 +5.3 240,482 + DvMF_0213 0.34 +5.1 240,608 + DvMF_0213 0.40 +4.8 240,666 - DvMF_0213 0.42 +4.8 241,087 + DvMF_0213 0.62 +6.7 241,135 + DvMF_0213 0.64 -1.6 241,218 - DvMF_0213 0.68 -4.2 241,296 + DvMF_0213 0.71 -1.6 241,304 - DvMF_0213 0.72 -2.3 241,304 - DvMF_0213 0.72 -2.4 241,350 - DvMF_0213 0.74 -1.1 241,666 + DvMF_0213 0.88 -1.6 241,673 - DvMF_0213 0.89 -1.1 241,745 + -1.9 242,151 - -3.2 242,229 + DvMF_0215 0.13 -2.1 242,488 - DvMF_0215 0.29 -3.2 242,523 - DvMF_0215 0.32 -3.0 242,620 + DvMF_0215 0.38 -4.9 242,623 - DvMF_0215 0.38 -1.7 242,623 - DvMF_0215 0.38 -1.6 242,661 + DvMF_0215 0.40 -2.9 242,676 + DvMF_0215 0.41 -5.0 242,706 + DvMF_0215 0.43 -5.1 242,791 + DvMF_0215 0.49 -5.0 242,797 - DvMF_0215 0.49 -4.3
Or see this region's nucleotide sequence