Experiment: 14 days starvation 37C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0164 and DvMF_0165 are separated by 121 nucleotides DvMF_0165 and DvMF_0166 are separated by 11 nucleotides DvMF_0166 and DvMF_0167 are separated by 135 nucleotides
DvMF_0164: DvMF_0164 - hypothetical protein (RefSeq), at 178,837 to 179,658
_0164
DvMF_0165: DvMF_0165 - 4Fe-4S ferredoxin iron-sulfur binding domain protein (RefSeq), at 179,780 to 180,337
_0165
DvMF_0166: DvMF_0166 - Formate dehydrogenase (RefSeq), at 180,349 to 182,484
_0166
DvMF_0167: DvMF_0167 - RNA polymerase, sigma-24 subunit, ECF subfamily (RefSeq), at 182,620 to 184,020
_0167
Position (kb) 180
181
182
183 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 179.499 kb on + strand, within DvMF_0164 at 179.523 kb on + strand, within DvMF_0164 at 180.066 kb on + strand, within DvMF_0165 at 180.110 kb on - strand, within DvMF_0165 at 180.407 kb on - strand at 180.502 kb on + strand at 180.783 kb on + strand, within DvMF_0166 at 180.783 kb on + strand, within DvMF_0166 at 180.970 kb on + strand, within DvMF_0166 at 181.079 kb on + strand, within DvMF_0166 at 181.167 kb on + strand, within DvMF_0166 at 181.175 kb on - strand, within DvMF_0166 at 181.251 kb on + strand, within DvMF_0166 at 181.299 kb on + strand, within DvMF_0166 at 181.411 kb on + strand, within DvMF_0166 at 181.419 kb on - strand, within DvMF_0166 at 181.496 kb on + strand, within DvMF_0166 at 181.697 kb on + strand, within DvMF_0166 at 181.705 kb on - strand, within DvMF_0166 at 181.850 kb on - strand, within DvMF_0166 at 181.850 kb on - strand, within DvMF_0166 at 181.871 kb on + strand, within DvMF_0166 at 181.997 kb on + strand, within DvMF_0166 at 181.999 kb on + strand, within DvMF_0166 at 182.054 kb on - strand, within DvMF_0166 at 182.427 kb on - strand at 182.438 kb on + strand at 182.438 kb on + strand at 182.546 kb on + strand at 182.554 kb on - strand at 182.818 kb on + strand, within DvMF_0167 at 182.913 kb on - strand, within DvMF_0167 at 182.972 kb on - strand, within DvMF_0167 at 182.982 kb on - strand, within DvMF_0167 at 183.014 kb on - strand, within DvMF_0167 at 183.032 kb on - strand, within DvMF_0167 at 183.214 kb on + strand, within DvMF_0167 at 183.261 kb on - strand, within DvMF_0167 at 183.437 kb on - strand, within DvMF_0167
Per-strain Table
Position Strand Gene LocusTag Fraction 14 days starvation 37C remove 179,499 + DvMF_0164 0.81 -0.8 179,523 + DvMF_0164 0.83 -3.3 180,066 + DvMF_0165 0.51 +0.3 180,110 - DvMF_0165 0.59 -0.2 180,407 - -0.1 180,502 + -0.5 180,783 + DvMF_0166 0.20 -0.6 180,783 + DvMF_0166 0.20 +0.4 180,970 + DvMF_0166 0.29 -0.7 181,079 + DvMF_0166 0.34 -0.4 181,167 + DvMF_0166 0.38 +0.5 181,175 - DvMF_0166 0.39 -1.0 181,251 + DvMF_0166 0.42 -1.8 181,299 + DvMF_0166 0.44 -2.3 181,411 + DvMF_0166 0.50 -3.6 181,419 - DvMF_0166 0.50 -1.6 181,496 + DvMF_0166 0.54 -0.6 181,697 + DvMF_0166 0.63 -0.3 181,705 - DvMF_0166 0.63 -0.7 181,850 - DvMF_0166 0.70 -1.4 181,850 - DvMF_0166 0.70 -1.1 181,871 + DvMF_0166 0.71 +0.5 181,997 + DvMF_0166 0.77 -0.1 181,999 + DvMF_0166 0.77 -1.3 182,054 - DvMF_0166 0.80 +0.2 182,427 - -0.7 182,438 + -1.4 182,438 + -0.7 182,546 + -1.0 182,554 - -0.2 182,818 + DvMF_0167 0.14 -4.2 182,913 - DvMF_0167 0.21 -0.9 182,972 - DvMF_0167 0.25 -3.0 182,982 - DvMF_0167 0.26 -0.9 183,014 - DvMF_0167 0.28 -1.0 183,032 - DvMF_0167 0.29 -0.1 183,214 + DvMF_0167 0.42 -0.6 183,261 - DvMF_0167 0.46 -1.5 183,437 - DvMF_0167 0.58 -0.1
Or see this region's nucleotide sequence