Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_4173

Experiment: m.b. Paraquat dichloride 0.015 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_4172 and Dshi_4173 are separated by 137 nucleotidesDshi_4173 and Dshi_4174 are separated by 70 nucleotidesDshi_4174 and Dshi_4175 are separated by 63 nucleotides Dshi_4172: Dshi_4172 - transcriptional regulator, AraC family (RefSeq), at 21,403 to 22,290 _4172 Dshi_4173: Dshi_4173 - hypothetical protein (RefSeq), at 22,428 to 23,387 _4173 Dshi_4174: Dshi_4174 - hypothetical protein (RefSeq), at 23,458 to 24,015 _4174 Dshi_4175: Dshi_4175 - hypothetical protein (RefSeq), at 24,079 to 25,098 _4175 Position (kb) 22 23 24Strain fitness (log2 ratio) -1 0 1at 21.481 kb on + strandat 21.511 kb on + strand, within Dshi_4172at 21.678 kb on - strand, within Dshi_4172at 21.689 kb on + strandat 22.119 kb on - strand, within Dshi_4172at 22.329 kb on + strandat 22.580 kb on + strand, within Dshi_4173at 22.715 kb on + strand, within Dshi_4173at 23.679 kb on + strand, within Dshi_4174at 23.708 kb on + strand, within Dshi_4174at 23.848 kb on + strand, within Dshi_4174at 23.856 kb on - strand, within Dshi_4174at 24.157 kb on - strandat 24.157 kb on - strandat 24.359 kb on + strand, within Dshi_4175

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Paraquat dichloride 0.015 mg/ml
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21,481 + +1.3
21,511 + Dshi_4172 0.12 -1.7
21,678 - Dshi_4172 0.31 +0.6
21,689 + +0.2
22,119 - Dshi_4172 0.81 +0.2
22,329 + -0.4
22,580 + Dshi_4173 0.16 -0.9
22,715 + Dshi_4173 0.30 +0.6
23,679 + Dshi_4174 0.40 +1.2
23,708 + Dshi_4174 0.45 -0.8
23,848 + Dshi_4174 0.70 -0.2
23,856 - Dshi_4174 0.71 -0.7
24,157 - +1.2
24,157 - +1.0
24,359 + Dshi_4175 0.27 -1.1

Or see this region's nucleotide sequence