Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3841

Experiment: m.b. Paraquat dichloride 0.015 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_3840 and Dshi_3841 overlap by 1 nucleotidesDshi_3841 and Dshi_3842 are separated by 99 nucleotidesDshi_3842 and Dshi_3843 are separated by 142 nucleotidesDshi_3843 and Dshi_3844 are separated by 29 nucleotides Dshi_3840: Dshi_3840 - thiamine pyrophosphate protein TPP binding domain protein (RefSeq), at 48,774 to 50,414 _3840 Dshi_3841: Dshi_3841 - Glutamate dehydrogenase (NADP(+)) (RefSeq), at 50,414 to 51,757 _3841 Dshi_3842: Dshi_3842 - protein of unknown function DUF1328 (RefSeq), at 51,857 to 52,027 _3842 Dshi_3843: Dshi_3843 - hypothetical protein (RefSeq), at 52,170 to 52,586 _3843 Dshi_3844: Dshi_3844 - cyclic nucleotide-binding protein (RefSeq), at 52,616 to 53,344 _3844 Position (kb) 50 51 52Strain fitness (log2 ratio) -2 -1 0 1 2at 49.581 kb on - strand, within Dshi_3840at 49.663 kb on - strand, within Dshi_3840at 49.694 kb on + strand, within Dshi_3840at 49.779 kb on + strand, within Dshi_3840at 50.114 kb on - strand, within Dshi_3840at 50.328 kb on - strandat 50.393 kb on - strandat 50.431 kb on - strandat 50.585 kb on - strand, within Dshi_3841at 50.587 kb on + strand, within Dshi_3841at 50.616 kb on - strand, within Dshi_3841at 50.783 kb on + strand, within Dshi_3841at 50.801 kb on - strand, within Dshi_3841at 50.801 kb on - strand, within Dshi_3841at 50.818 kb on + strand, within Dshi_3841at 50.877 kb on + strand, within Dshi_3841at 50.885 kb on - strand, within Dshi_3841at 50.885 kb on - strand, within Dshi_3841at 50.975 kb on + strand, within Dshi_3841at 50.982 kb on - strand, within Dshi_3841at 50.983 kb on - strand, within Dshi_3841at 50.988 kb on - strand, within Dshi_3841at 51.243 kb on + strand, within Dshi_3841at 51.254 kb on - strand, within Dshi_3841at 51.381 kb on + strand, within Dshi_3841at 51.381 kb on + strand, within Dshi_3841at 51.381 kb on + strand, within Dshi_3841at 51.485 kb on - strand, within Dshi_3841at 51.486 kb on + strand, within Dshi_3841at 51.504 kb on - strand, within Dshi_3841at 51.550 kb on + strand, within Dshi_3841at 51.593 kb on - strand, within Dshi_3841at 51.598 kb on - strand, within Dshi_3841at 51.626 kb on - strandat 51.632 kb on - strandat 51.644 kb on + strandat 51.765 kb on + strandat 51.765 kb on + strandat 51.839 kb on - strandat 51.855 kb on + strandat 51.855 kb on + strandat 51.855 kb on + strandat 51.897 kb on - strand, within Dshi_3842at 51.977 kb on - strand, within Dshi_3842at 52.171 kb on - strandat 52.176 kb on - strandat 52.195 kb on + strandat 52.197 kb on + strandat 52.222 kb on + strand, within Dshi_3843at 52.242 kb on + strand, within Dshi_3843at 52.333 kb on + strand, within Dshi_3843at 52.337 kb on + strand, within Dshi_3843at 52.485 kb on + strand, within Dshi_3843at 52.493 kb on - strand, within Dshi_3843at 52.562 kb on - strandat 52.607 kb on - strandat 52.686 kb on - strandat 52.720 kb on - strand, within Dshi_3844

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Paraquat dichloride 0.015 mg/ml
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49,581 - Dshi_3840 0.49 -0.4
49,663 - Dshi_3840 0.54 -0.4
49,694 + Dshi_3840 0.56 -0.3
49,779 + Dshi_3840 0.61 +0.2
50,114 - Dshi_3840 0.82 +0.1
50,328 - +0.1
50,393 - -0.6
50,431 - -0.3
50,585 - Dshi_3841 0.13 -0.7
50,587 + Dshi_3841 0.13 +0.7
50,616 - Dshi_3841 0.15 -0.6
50,783 + Dshi_3841 0.27 +0.3
50,801 - Dshi_3841 0.29 +0.9
50,801 - Dshi_3841 0.29 +2.1
50,818 + Dshi_3841 0.30 -0.1
50,877 + Dshi_3841 0.34 +0.5
50,885 - Dshi_3841 0.35 +0.3
50,885 - Dshi_3841 0.35 +0.5
50,975 + Dshi_3841 0.42 +0.2
50,982 - Dshi_3841 0.42 -0.3
50,983 - Dshi_3841 0.42 +0.0
50,988 - Dshi_3841 0.43 +0.5
51,243 + Dshi_3841 0.62 -0.0
51,254 - Dshi_3841 0.62 -0.9
51,381 + Dshi_3841 0.72 -1.0
51,381 + Dshi_3841 0.72 +2.1
51,381 + Dshi_3841 0.72 -0.2
51,485 - Dshi_3841 0.80 +0.2
51,486 + Dshi_3841 0.80 +0.1
51,504 - Dshi_3841 0.81 +0.1
51,550 + Dshi_3841 0.85 -0.4
51,593 - Dshi_3841 0.88 +0.3
51,598 - Dshi_3841 0.88 -0.7
51,626 - +0.8
51,632 - +1.5
51,644 + +2.1
51,765 + -0.5
51,765 + -0.1
51,839 - +0.2
51,855 + +0.2
51,855 + -1.2
51,855 + +1.5
51,897 - Dshi_3842 0.23 +0.1
51,977 - Dshi_3842 0.70 +1.0
52,171 - +1.2
52,176 - -1.2
52,195 + -2.3
52,197 + -1.2
52,222 + Dshi_3843 0.12 -1.0
52,242 + Dshi_3843 0.17 -0.1
52,333 + Dshi_3843 0.39 +1.0
52,337 + Dshi_3843 0.40 -0.3
52,485 + Dshi_3843 0.76 -0.2
52,493 - Dshi_3843 0.77 -1.5
52,562 - +0.2
52,607 - -0.2
52,686 - +0.7
52,720 - Dshi_3844 0.14 +0.5

Or see this region's nucleotide sequence