Experiment: m.b. Paraquat dichloride 0.015 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_3509 and Dshi_3510 are separated by 6 nucleotides Dshi_3510 and Dshi_3511 overlap by 4 nucleotides Dshi_3511 and Dshi_3512 are separated by 12 nucleotides Dshi_3512 and Dshi_3513 are separated by 68 nucleotides
Dshi_3509: Dshi_3509 - Squalene/phytoene synthase (RefSeq), at 3,689,348 to 3,690,433
_3509
Dshi_3510: Dshi_3510 - TspO and MBR like protein (RefSeq), at 3,690,440 to 3,690,922
_3510
Dshi_3511: Dshi_3511 - hypothetical protein (RefSeq), at 3,690,919 to 3,691,104
_3511
Dshi_3512: Dshi_3512 - hydroxyneurosporene synthase (RefSeq), at 3,691,117 to 3,691,875
_3512
Dshi_3513: Dshi_3513 - Zeta-phytoene desaturase (RefSeq), at 3,691,944 to 3,693,542
_3513
Position (kb)
3691
3692 Strain fitness (log2 ratio)
-1
0
1
2 at 3690.293 kb on + strand, within Dshi_3509 at 3690.340 kb on - strand at 3690.409 kb on + strand at 3690.409 kb on + strand at 3690.469 kb on + strand at 3690.475 kb on - strand at 3690.489 kb on - strand, within Dshi_3510 at 3690.518 kb on + strand, within Dshi_3510 at 3690.560 kb on - strand, within Dshi_3510 at 3690.591 kb on - strand, within Dshi_3510 at 3690.727 kb on + strand, within Dshi_3510 at 3690.846 kb on - strand, within Dshi_3510 at 3690.917 kb on + strand at 3691.000 kb on - strand, within Dshi_3511 at 3691.150 kb on + strand at 3691.184 kb on - strand at 3691.192 kb on - strand at 3691.192 kb on - strand at 3691.204 kb on - strand, within Dshi_3512 at 3691.228 kb on - strand, within Dshi_3512 at 3691.284 kb on + strand, within Dshi_3512 at 3691.290 kb on + strand, within Dshi_3512 at 3691.297 kb on - strand, within Dshi_3512 at 3691.343 kb on + strand, within Dshi_3512 at 3691.386 kb on - strand, within Dshi_3512 at 3691.414 kb on + strand, within Dshi_3512 at 3691.439 kb on - strand, within Dshi_3512 at 3691.568 kb on + strand, within Dshi_3512 at 3691.588 kb on + strand, within Dshi_3512 at 3691.596 kb on - strand, within Dshi_3512 at 3691.636 kb on - strand, within Dshi_3512 at 3691.712 kb on - strand, within Dshi_3512 at 3691.718 kb on - strand, within Dshi_3512 at 3691.792 kb on - strand, within Dshi_3512 at 3691.838 kb on + strand at 3691.965 kb on - strand at 3691.987 kb on + strand at 3692.122 kb on + strand, within Dshi_3513 at 3692.435 kb on - strand, within Dshi_3513 at 3692.541 kb on + strand, within Dshi_3513 at 3692.594 kb on - strand, within Dshi_3513 at 3692.617 kb on - strand, within Dshi_3513 at 3692.624 kb on - strand, within Dshi_3513 at 3692.795 kb on - strand, within Dshi_3513 at 3692.809 kb on + strand, within Dshi_3513
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Paraquat dichloride 0.015 mg/ml remove 3,690,293 + Dshi_3509 0.87 -0.0 3,690,340 - +0.2 3,690,409 + +0.9 3,690,409 + +2.0 3,690,469 + +0.2 3,690,475 - +0.6 3,690,489 - Dshi_3510 0.10 +1.0 3,690,518 + Dshi_3510 0.16 -0.5 3,690,560 - Dshi_3510 0.25 +1.0 3,690,591 - Dshi_3510 0.31 +0.8 3,690,727 + Dshi_3510 0.59 -0.2 3,690,846 - Dshi_3510 0.84 +0.2 3,690,917 + -0.8 3,691,000 - Dshi_3511 0.44 -0.2 3,691,150 + +0.2 3,691,184 - +1.3 3,691,192 - -1.0 3,691,192 - -0.3 3,691,204 - Dshi_3512 0.11 +0.1 3,691,228 - Dshi_3512 0.15 +1.2 3,691,284 + Dshi_3512 0.22 +1.2 3,691,290 + Dshi_3512 0.23 -0.1 3,691,297 - Dshi_3512 0.24 -0.0 3,691,343 + Dshi_3512 0.30 +0.2 3,691,386 - Dshi_3512 0.35 +0.7 3,691,414 + Dshi_3512 0.39 +1.4 3,691,439 - Dshi_3512 0.42 +1.5 3,691,568 + Dshi_3512 0.59 +1.0 3,691,588 + Dshi_3512 0.62 +0.4 3,691,596 - Dshi_3512 0.63 +0.2 3,691,636 - Dshi_3512 0.68 +1.4 3,691,712 - Dshi_3512 0.78 +0.5 3,691,718 - Dshi_3512 0.79 +0.6 3,691,792 - Dshi_3512 0.89 -1.3 3,691,838 + +0.7 3,691,965 - +1.3 3,691,987 + -0.6 3,692,122 + Dshi_3513 0.11 +0.3 3,692,435 - Dshi_3513 0.31 -0.5 3,692,541 + Dshi_3513 0.37 +1.6 3,692,594 - Dshi_3513 0.41 +0.2 3,692,617 - Dshi_3513 0.42 -0.3 3,692,624 - Dshi_3513 0.43 +0.3 3,692,795 - Dshi_3513 0.53 +1.0 3,692,809 + Dshi_3513 0.54 -0.2
Or see this region's nucleotide sequence