Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3301

Experiment: m.b. Paraquat dichloride 0.015 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_3299 and Dshi_3300 overlap by 1 nucleotidesDshi_3300 and Dshi_3301 are separated by 160 nucleotidesDshi_3301 and Dshi_3302 are separated by 283 nucleotidesDshi_3302 and Dshi_3303 overlap by 4 nucleotides Dshi_3299: Dshi_3299 - two component transcriptional regulator, winged helix family (RefSeq), at 3,464,567 to 3,465,280 _3299 Dshi_3300: Dshi_3300 - transcriptional regulator, MarR family (RefSeq), at 3,465,280 to 3,465,786 _3300 Dshi_3301: Dshi_3301 - branched-chain amino acid aminotransferase (RefSeq), at 3,465,947 to 3,466,816 _3301 Dshi_3302: Dshi_3302 - hypothetical protein (RefSeq), at 3,467,100 to 3,467,408 _3302 Dshi_3303: Dshi_3303 - hypothetical protein (RefSeq), at 3,467,405 to 3,468,508 _3303 Position (kb) 3465 3466 3467Strain fitness (log2 ratio) -2 -1 0 1at 3465.483 kb on - strand, within Dshi_3300at 3465.565 kb on - strand, within Dshi_3300at 3465.577 kb on - strand, within Dshi_3300at 3465.620 kb on + strand, within Dshi_3300at 3465.677 kb on - strand, within Dshi_3300at 3465.698 kb on - strand, within Dshi_3300at 3465.713 kb on + strand, within Dshi_3300at 3465.721 kb on - strand, within Dshi_3300at 3465.721 kb on - strand, within Dshi_3300at 3465.731 kb on - strand, within Dshi_3300at 3465.749 kb on + strandat 3465.749 kb on + strandat 3465.756 kb on - strandat 3465.762 kb on - strandat 3465.792 kb on - strandat 3466.824 kb on + strandat 3466.904 kb on + strandat 3466.972 kb on + strandat 3467.133 kb on + strand, within Dshi_3302at 3467.141 kb on - strand, within Dshi_3302at 3467.167 kb on - strand, within Dshi_3302at 3467.486 kb on + strandat 3467.486 kb on + strandat 3467.565 kb on - strand, within Dshi_3303at 3467.597 kb on - strand, within Dshi_3303at 3467.597 kb on - strand, within Dshi_3303at 3467.629 kb on - strand, within Dshi_3303at 3467.633 kb on + strand, within Dshi_3303at 3467.633 kb on + strand, within Dshi_3303at 3467.646 kb on - strand, within Dshi_3303at 3467.711 kb on + strand, within Dshi_3303

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Paraquat dichloride 0.015 mg/ml
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3,465,483 - Dshi_3300 0.40 -1.3
3,465,565 - Dshi_3300 0.56 +0.5
3,465,577 - Dshi_3300 0.59 -2.2
3,465,620 + Dshi_3300 0.67 -0.3
3,465,677 - Dshi_3300 0.78 -2.7
3,465,698 - Dshi_3300 0.82 +0.8
3,465,713 + Dshi_3300 0.85 -0.3
3,465,721 - Dshi_3300 0.87 +0.1
3,465,721 - Dshi_3300 0.87 +0.0
3,465,731 - Dshi_3300 0.89 +0.3
3,465,749 + +0.3
3,465,749 + -0.1
3,465,756 - +0.1
3,465,762 - -1.7
3,465,792 - +0.1
3,466,824 + +0.4
3,466,904 + +0.5
3,466,972 + +0.5
3,467,133 + Dshi_3302 0.11 -1.8
3,467,141 - Dshi_3302 0.13 +0.5
3,467,167 - Dshi_3302 0.22 -0.6
3,467,486 + +0.7
3,467,486 + -1.2
3,467,565 - Dshi_3303 0.14 +0.4
3,467,597 - Dshi_3303 0.17 +1.6
3,467,597 - Dshi_3303 0.17 -0.4
3,467,629 - Dshi_3303 0.20 -0.2
3,467,633 + Dshi_3303 0.21 -1.0
3,467,633 + Dshi_3303 0.21 -0.6
3,467,646 - Dshi_3303 0.22 -0.2
3,467,711 + Dshi_3303 0.28 +1.4

Or see this region's nucleotide sequence