Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1746

Experiment: m.b. Paraquat dichloride 0.015 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDshi_1744 and Dshi_1745 are separated by 88 nucleotidesDshi_1745 and Dshi_1746 are separated by 52 nucleotidesDshi_1746 and Dshi_1747 are separated by 99 nucleotides Dshi_1744: Dshi_1744 - pantetheine-phosphate adenylyltransferase (RefSeq), at 1,810,248 to 1,810,763 _1744 Dshi_1745: Dshi_1745 - putative signal-transduction protein with CBS domains (RefSeq), at 1,810,852 to 1,811,286 _1745 Dshi_1746: Dshi_1746 - transcriptional regulator, LysR family (RefSeq), at 1,811,339 to 1,812,232 _1746 Dshi_1747: Dshi_1747 - methylmalonate-semialdehyde dehydrogenase (RefSeq), at 1,812,332 to 1,813,831 _1747 Position (kb) 1811 1812 1813Strain fitness (log2 ratio) -2 -1 0 1at 1810.822 kb on + strandat 1810.827 kb on + strandat 1810.830 kb on - strandat 1810.841 kb on - strandat 1811.038 kb on + strand, within Dshi_1745at 1811.108 kb on - strand, within Dshi_1745at 1811.182 kb on - strand, within Dshi_1745at 1811.290 kb on - strandat 1811.316 kb on - strandat 1811.324 kb on + strandat 1811.767 kb on - strand, within Dshi_1746at 1811.781 kb on + strand, within Dshi_1746at 1811.799 kb on - strand, within Dshi_1746at 1811.831 kb on + strand, within Dshi_1746at 1811.935 kb on - strand, within Dshi_1746at 1811.962 kb on + strand, within Dshi_1746at 1812.221 kb on + strandat 1812.302 kb on + strandat 1812.317 kb on + strandat 1812.587 kb on + strand, within Dshi_1747at 1812.645 kb on + strand, within Dshi_1747at 1812.645 kb on + strand, within Dshi_1747at 1812.645 kb on + strand, within Dshi_1747at 1812.645 kb on + strand, within Dshi_1747at 1812.645 kb on + strand, within Dshi_1747at 1812.653 kb on - strand, within Dshi_1747at 1812.653 kb on - strand, within Dshi_1747at 1812.713 kb on + strand, within Dshi_1747at 1812.713 kb on + strand, within Dshi_1747at 1813.013 kb on - strand, within Dshi_1747

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Paraquat dichloride 0.015 mg/ml
remove
1,810,822 + -0.2
1,810,827 + +0.4
1,810,830 - +0.4
1,810,841 - +1.0
1,811,038 + Dshi_1745 0.43 +0.3
1,811,108 - Dshi_1745 0.59 +0.5
1,811,182 - Dshi_1745 0.76 -0.5
1,811,290 - +0.7
1,811,316 - +1.1
1,811,324 + +0.1
1,811,767 - Dshi_1746 0.48 +0.3
1,811,781 + Dshi_1746 0.49 +1.5
1,811,799 - Dshi_1746 0.51 +0.2
1,811,831 + Dshi_1746 0.55 -1.2
1,811,935 - Dshi_1746 0.67 -2.3
1,811,962 + Dshi_1746 0.70 -0.9
1,812,221 + +0.0
1,812,302 + -0.0
1,812,317 + -0.4
1,812,587 + Dshi_1747 0.17 +0.6
1,812,645 + Dshi_1747 0.21 +0.7
1,812,645 + Dshi_1747 0.21 -0.1
1,812,645 + Dshi_1747 0.21 -0.3
1,812,645 + Dshi_1747 0.21 +0.5
1,812,645 + Dshi_1747 0.21 -0.9
1,812,653 - Dshi_1747 0.21 -0.9
1,812,653 - Dshi_1747 0.21 +0.4
1,812,713 + Dshi_1747 0.25 +0.2
1,812,713 + Dshi_1747 0.25 -0.9
1,813,013 - Dshi_1747 0.45 +1.6

Or see this region's nucleotide sequence