Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1672
Experiment: m.b. Paraquat dichloride 0.015 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | m.b. Paraquat dichloride 0.015 mg/ml |
---|---|---|---|---|---|
remove | |||||
1,740,463 | + | Dshi_1671 | 0.40 | +0.2 | |
1,740,572 | + | Dshi_1671 | 0.47 | -0.2 | |
1,740,582 | + | Dshi_1671 | 0.48 | -0.1 | |
1,740,662 | + | Dshi_1671 | 0.54 | +0.5 | |
1,740,752 | - | Dshi_1671 | 0.60 | -1.2 | |
1,740,824 | + | Dshi_1671 | 0.66 | -1.1 | |
1,740,828 | + | Dshi_1671 | 0.66 | -0.1 | |
1,740,828 | + | Dshi_1671 | 0.66 | +0.4 | |
1,740,947 | - | Dshi_1671 | 0.74 | -0.3 | |
1,741,017 | - | Dshi_1671 | 0.79 | +0.3 | |
1,741,101 | + | Dshi_1671 | 0.85 | -2.0 | |
1,741,109 | - | Dshi_1671 | 0.86 | +0.1 | |
1,741,241 | - | +0.0 | |||
1,741,241 | - | +0.3 | |||
1,741,283 | - | -0.3 | |||
1,742,144 | - | -2.1 | |||
1,742,304 | + | Dshi_1673 | 0.18 | -1.4 | |
1,742,326 | + | Dshi_1673 | 0.20 | -2.8 | |
1,742,377 | + | Dshi_1673 | 0.24 | -1.3 | |
1,742,421 | + | Dshi_1673 | 0.28 | -0.6 | |
1,742,782 | - | Dshi_1673 | 0.58 | -1.3 | |
1,742,925 | + | Dshi_1673 | 0.70 | -1.3 | |
1,743,009 | - | Dshi_1673 | 0.77 | -1.1 | |
1,743,063 | + | Dshi_1673 | 0.82 | -0.6 | |
1,743,063 | + | Dshi_1673 | 0.82 | -2.5 | |
1,743,071 | - | Dshi_1673 | 0.83 | +0.7 | |
1,743,071 | - | Dshi_1673 | 0.83 | -0.5 | |
1,743,071 | - | Dshi_1673 | 0.83 | -1.6 | |
1,743,071 | - | Dshi_1673 | 0.83 | -1.6 |
Or see this region's nucleotide sequence