Experiment: m.b. Paraquat dichloride 0.015 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0693 and Dshi_0694 are separated by 157 nucleotides Dshi_0694 and Dshi_0695 overlap by 4 nucleotides Dshi_0695 and Dshi_0696 overlap by 4 nucleotides Dshi_0696 and Dshi_0697 are separated by 15 nucleotides
Dshi_0693: Dshi_0693 - 4-oxalocrotonate tautomerase (RefSeq), at 700,069 to 700,644
_0693
Dshi_0694: Dshi_0694 - transcriptional regulator, GntR family (RefSeq), at 700,802 to 701,602
_0694
Dshi_0695: Dshi_0695 - 3-isopropylmalate dehydratase, large subunit (RefSeq), at 701,599 to 702,993
_0695
Dshi_0696: Dshi_0696 - 3-isopropylmalate dehydratase, small subunit (RefSeq), at 702,990 to 703,649
_0696
Dshi_0697: Dshi_0697 - TRAP dicarboxylate transporter- DctP subunit (RefSeq), at 703,665 to 704,675
_0697
Position (kb) 701
702
703 Strain fitness (log2 ratio) -1
0
1
2
3 at 700.606 kb on + strand at 700.618 kb on + strand at 700.698 kb on + strand at 700.729 kb on + strand at 700.865 kb on - strand at 700.901 kb on + strand, within Dshi_0694 at 701.054 kb on + strand, within Dshi_0694 at 701.301 kb on + strand, within Dshi_0694 at 701.320 kb on - strand, within Dshi_0694 at 701.332 kb on - strand, within Dshi_0694 at 701.385 kb on + strand, within Dshi_0694 at 701.425 kb on + strand, within Dshi_0694 at 701.482 kb on - strand, within Dshi_0694 at 701.482 kb on - strand, within Dshi_0694 at 701.525 kb on + strand at 701.525 kb on + strand at 701.525 kb on + strand at 701.541 kb on + strand at 701.603 kb on - strand at 701.715 kb on - strand at 701.769 kb on + strand, within Dshi_0695 at 701.779 kb on - strand, within Dshi_0695 at 701.784 kb on + strand, within Dshi_0695 at 701.859 kb on + strand, within Dshi_0695 at 701.918 kb on + strand, within Dshi_0695 at 701.947 kb on + strand, within Dshi_0695 at 701.955 kb on - strand, within Dshi_0695 at 701.955 kb on - strand, within Dshi_0695 at 702.074 kb on - strand, within Dshi_0695 at 702.125 kb on + strand, within Dshi_0695 at 702.133 kb on - strand, within Dshi_0695 at 702.228 kb on - strand, within Dshi_0695 at 702.271 kb on + strand, within Dshi_0695 at 702.351 kb on + strand, within Dshi_0695 at 702.376 kb on + strand, within Dshi_0695 at 702.376 kb on + strand, within Dshi_0695 at 702.391 kb on + strand, within Dshi_0695 at 702.448 kb on - strand, within Dshi_0695 at 702.467 kb on - strand, within Dshi_0695 at 702.484 kb on + strand, within Dshi_0695 at 702.696 kb on + strand, within Dshi_0695 at 702.774 kb on + strand, within Dshi_0695 at 702.799 kb on - strand, within Dshi_0695 at 702.809 kb on - strand, within Dshi_0695 at 702.810 kb on + strand, within Dshi_0695 at 702.830 kb on - strand, within Dshi_0695 at 702.832 kb on + strand, within Dshi_0695 at 702.872 kb on - strand at 702.883 kb on + strand at 702.901 kb on + strand at 703.054 kb on + strand at 703.087 kb on - strand, within Dshi_0696 at 703.106 kb on + strand, within Dshi_0696 at 703.164 kb on + strand, within Dshi_0696 at 703.178 kb on - strand, within Dshi_0696 at 703.254 kb on + strand, within Dshi_0696 at 703.350 kb on + strand, within Dshi_0696 at 703.358 kb on - strand, within Dshi_0696 at 703.377 kb on + strand, within Dshi_0696 at 703.449 kb on + strand, within Dshi_0696 at 703.524 kb on - strand, within Dshi_0696 at 703.583 kb on + strand, within Dshi_0696 at 703.591 kb on - strand at 703.685 kb on - strand at 703.685 kb on - strand at 703.768 kb on + strand, within Dshi_0697 at 703.772 kb on + strand, within Dshi_0697 at 703.775 kb on - strand, within Dshi_0697 at 703.775 kb on - strand, within Dshi_0697 at 703.780 kb on - strand, within Dshi_0697 at 703.786 kb on + strand, within Dshi_0697 at 703.816 kb on - strand, within Dshi_0697 at 703.881 kb on - strand, within Dshi_0697 at 703.883 kb on + strand, within Dshi_0697 at 703.891 kb on - strand, within Dshi_0697 at 703.910 kb on + strand, within Dshi_0697 at 703.975 kb on + strand, within Dshi_0697
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Paraquat dichloride 0.015 mg/ml remove 700,606 + -0.1 700,618 + -1.0 700,698 + +0.3 700,729 + -1.0 700,865 - -0.9 700,901 + Dshi_0694 0.12 +0.3 701,054 + Dshi_0694 0.31 -0.4 701,301 + Dshi_0694 0.62 -0.5 701,320 - Dshi_0694 0.65 +0.3 701,332 - Dshi_0694 0.66 -0.1 701,385 + Dshi_0694 0.73 -0.2 701,425 + Dshi_0694 0.78 +0.3 701,482 - Dshi_0694 0.85 +0.6 701,482 - Dshi_0694 0.85 -0.1 701,525 + +0.1 701,525 + -0.0 701,525 + +0.2 701,541 + +0.9 701,603 - -0.6 701,715 - -0.9 701,769 + Dshi_0695 0.12 +0.1 701,779 - Dshi_0695 0.13 -1.1 701,784 + Dshi_0695 0.13 -0.0 701,859 + Dshi_0695 0.19 -0.0 701,918 + Dshi_0695 0.23 +0.0 701,947 + Dshi_0695 0.25 +0.2 701,955 - Dshi_0695 0.26 -0.0 701,955 - Dshi_0695 0.26 -0.8 702,074 - Dshi_0695 0.34 +1.1 702,125 + Dshi_0695 0.38 +0.2 702,133 - Dshi_0695 0.38 +0.5 702,228 - Dshi_0695 0.45 +0.7 702,271 + Dshi_0695 0.48 +0.2 702,351 + Dshi_0695 0.54 +0.9 702,376 + Dshi_0695 0.56 +0.0 702,376 + Dshi_0695 0.56 -1.1 702,391 + Dshi_0695 0.57 -0.3 702,448 - Dshi_0695 0.61 +0.4 702,467 - Dshi_0695 0.62 +0.9 702,484 + Dshi_0695 0.63 -0.2 702,696 + Dshi_0695 0.79 -1.1 702,774 + Dshi_0695 0.84 -0.4 702,799 - Dshi_0695 0.86 +3.2 702,809 - Dshi_0695 0.87 -0.3 702,810 + Dshi_0695 0.87 -0.4 702,830 - Dshi_0695 0.88 +0.4 702,832 + Dshi_0695 0.88 -0.3 702,872 - +0.5 702,883 + +0.1 702,901 + -0.4 703,054 + -0.1 703,087 - Dshi_0696 0.15 -0.5 703,106 + Dshi_0696 0.18 +1.3 703,164 + Dshi_0696 0.26 +0.3 703,178 - Dshi_0696 0.28 +0.1 703,254 + Dshi_0696 0.40 +0.5 703,350 + Dshi_0696 0.55 +0.5 703,358 - Dshi_0696 0.56 +0.4 703,377 + Dshi_0696 0.59 +1.2 703,449 + Dshi_0696 0.70 +1.1 703,524 - Dshi_0696 0.81 -0.3 703,583 + Dshi_0696 0.90 -0.5 703,591 - -0.8 703,685 - +0.3 703,685 - +0.6 703,768 + Dshi_0697 0.10 +0.3 703,772 + Dshi_0697 0.11 +0.3 703,775 - Dshi_0697 0.11 -1.0 703,775 - Dshi_0697 0.11 -0.7 703,780 - Dshi_0697 0.11 +1.4 703,786 + Dshi_0697 0.12 -0.9 703,816 - Dshi_0697 0.15 +0.0 703,881 - Dshi_0697 0.21 -0.1 703,883 + Dshi_0697 0.22 -0.1 703,891 - Dshi_0697 0.22 -0.2 703,910 + Dshi_0697 0.24 -1.7 703,975 + Dshi_0697 0.31 +0.5
Or see this region's nucleotide sequence