Experiment: m.b. Paraquat dichloride 0.015 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0467 and Dshi_0468 are separated by 33 nucleotides Dshi_0468 and Dshi_0469 overlap by 4 nucleotides Dshi_0469 and Dshi_0470 are separated by 63 nucleotides Dshi_0470 and Dshi_0471 are separated by 62 nucleotides
Dshi_0467: Dshi_0467 - histidine kinase (RefSeq), at 452,199 to 454,475
_0467
Dshi_0468: Dshi_0468 - hypothetical protein (RefSeq), at 454,509 to 455,171
_0468
Dshi_0469: Dshi_0469 - hypothetical protein (RefSeq), at 455,168 to 455,518
_0469
Dshi_0470: Dshi_0470 - Sulphur oxidation protein SoxZ (RefSeq), at 455,582 to 456,454
_0470
Dshi_0471: Dshi_0471 - beta-lactamase domain protein (RefSeq), at 456,517 to 457,557
_0471
Position (kb) 455
456 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 454.208 kb on + strand, within Dshi_0467 at 454.212 kb on + strand, within Dshi_0467 at 454.271 kb on + strand at 454.469 kb on + strand at 454.476 kb on + strand at 454.513 kb on + strand at 454.532 kb on + strand at 454.542 kb on + strand at 454.547 kb on + strand at 454.594 kb on + strand, within Dshi_0468 at 454.612 kb on + strand, within Dshi_0468 at 454.621 kb on - strand, within Dshi_0468 at 454.642 kb on + strand, within Dshi_0468 at 454.642 kb on + strand, within Dshi_0468 at 454.676 kb on - strand, within Dshi_0468 at 454.719 kb on + strand, within Dshi_0468 at 454.726 kb on + strand, within Dshi_0468 at 454.760 kb on - strand, within Dshi_0468 at 454.798 kb on - strand, within Dshi_0468 at 454.806 kb on - strand, within Dshi_0468 at 454.814 kb on + strand, within Dshi_0468 at 454.819 kb on + strand, within Dshi_0468 at 454.880 kb on - strand, within Dshi_0468 at 454.884 kb on - strand, within Dshi_0468 at 454.911 kb on - strand, within Dshi_0468 at 454.927 kb on + strand, within Dshi_0468 at 454.984 kb on - strand, within Dshi_0468 at 454.984 kb on - strand, within Dshi_0468 at 455.065 kb on + strand, within Dshi_0468 at 455.073 kb on - strand, within Dshi_0468 at 455.073 kb on - strand, within Dshi_0468 at 455.074 kb on - strand, within Dshi_0468 at 455.074 kb on - strand, within Dshi_0468 at 455.084 kb on - strand, within Dshi_0468 at 455.084 kb on - strand, within Dshi_0468 at 455.102 kb on + strand, within Dshi_0468 at 455.102 kb on + strand, within Dshi_0468 at 455.110 kb on - strand at 455.132 kb on - strand at 455.145 kb on - strand at 455.153 kb on + strand at 455.281 kb on - strand, within Dshi_0469 at 455.287 kb on - strand, within Dshi_0469 at 455.373 kb on - strand, within Dshi_0469 at 455.383 kb on - strand, within Dshi_0469 at 455.413 kb on + strand, within Dshi_0469 at 455.421 kb on - strand, within Dshi_0469 at 455.487 kb on - strand at 455.487 kb on - strand at 455.494 kb on - strand at 455.511 kb on + strand at 455.639 kb on + strand at 455.729 kb on + strand, within Dshi_0470 at 455.763 kb on - strand, within Dshi_0470 at 455.791 kb on + strand, within Dshi_0470 at 455.815 kb on + strand, within Dshi_0470 at 455.815 kb on + strand, within Dshi_0470 at 455.815 kb on + strand, within Dshi_0470 at 455.865 kb on + strand, within Dshi_0470 at 455.908 kb on + strand, within Dshi_0470 at 455.921 kb on - strand, within Dshi_0470 at 456.036 kb on - strand, within Dshi_0470 at 456.043 kb on - strand, within Dshi_0470 at 456.072 kb on + strand, within Dshi_0470 at 456.075 kb on + strand, within Dshi_0470 at 456.082 kb on - strand, within Dshi_0470 at 456.093 kb on - strand, within Dshi_0470 at 456.170 kb on - strand, within Dshi_0470 at 456.190 kb on - strand, within Dshi_0470 at 456.218 kb on - strand, within Dshi_0470 at 456.225 kb on + strand, within Dshi_0470 at 456.261 kb on - strand, within Dshi_0470 at 456.346 kb on - strand, within Dshi_0470 at 456.411 kb on + strand at 456.424 kb on - strand at 456.473 kb on + strand at 456.496 kb on + strand at 456.501 kb on + strand at 456.506 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Paraquat dichloride 0.015 mg/ml remove 454,208 + Dshi_0467 0.88 -1.4 454,212 + Dshi_0467 0.88 +0.5 454,271 + +0.2 454,469 + -0.6 454,476 + -1.4 454,513 + +0.6 454,532 + -1.6 454,542 + +0.2 454,547 + -0.1 454,594 + Dshi_0468 0.13 +1.7 454,612 + Dshi_0468 0.16 +0.2 454,621 - Dshi_0468 0.17 -0.1 454,642 + Dshi_0468 0.20 -1.1 454,642 + Dshi_0468 0.20 +0.9 454,676 - Dshi_0468 0.25 -0.1 454,719 + Dshi_0468 0.32 +1.3 454,726 + Dshi_0468 0.33 -0.6 454,760 - Dshi_0468 0.38 +0.9 454,798 - Dshi_0468 0.44 -0.2 454,806 - Dshi_0468 0.45 -0.2 454,814 + Dshi_0468 0.46 -0.1 454,819 + Dshi_0468 0.47 +0.9 454,880 - Dshi_0468 0.56 +0.2 454,884 - Dshi_0468 0.57 -1.1 454,911 - Dshi_0468 0.61 -0.6 454,927 + Dshi_0468 0.63 +0.2 454,984 - Dshi_0468 0.72 -1.4 454,984 - Dshi_0468 0.72 -0.1 455,065 + Dshi_0468 0.84 +0.6 455,073 - Dshi_0468 0.85 -0.1 455,073 - Dshi_0468 0.85 -1.1 455,074 - Dshi_0468 0.85 -0.5 455,074 - Dshi_0468 0.85 +0.1 455,084 - Dshi_0468 0.87 -0.5 455,084 - Dshi_0468 0.87 -1.5 455,102 + Dshi_0468 0.89 -2.1 455,102 + Dshi_0468 0.89 +0.1 455,110 - +2.9 455,132 - -0.5 455,145 - -0.3 455,153 + -0.7 455,281 - Dshi_0469 0.32 -0.5 455,287 - Dshi_0469 0.34 +1.2 455,373 - Dshi_0469 0.58 -0.1 455,383 - Dshi_0469 0.61 +0.0 455,413 + Dshi_0469 0.70 +1.5 455,421 - Dshi_0469 0.72 +1.7 455,487 - +0.1 455,487 - +0.9 455,494 - -0.4 455,511 + +1.5 455,639 + -0.7 455,729 + Dshi_0470 0.17 +0.1 455,763 - Dshi_0470 0.21 -0.7 455,791 + Dshi_0470 0.24 -1.7 455,815 + Dshi_0470 0.27 -0.1 455,815 + Dshi_0470 0.27 +0.3 455,815 + Dshi_0470 0.27 -0.3 455,865 + Dshi_0470 0.32 -0.1 455,908 + Dshi_0470 0.37 -0.7 455,921 - Dshi_0470 0.39 +1.3 456,036 - Dshi_0470 0.52 +2.9 456,043 - Dshi_0470 0.53 +0.7 456,072 + Dshi_0470 0.56 +0.9 456,075 + Dshi_0470 0.56 -0.9 456,082 - Dshi_0470 0.57 -0.9 456,093 - Dshi_0470 0.59 +0.2 456,170 - Dshi_0470 0.67 -0.2 456,190 - Dshi_0470 0.70 +0.3 456,218 - Dshi_0470 0.73 -0.4 456,225 + Dshi_0470 0.74 -0.7 456,261 - Dshi_0470 0.78 -0.5 456,346 - Dshi_0470 0.88 -0.8 456,411 + +0.2 456,424 - -0.0 456,473 + -0.7 456,496 + -0.1 456,501 + -0.2 456,506 + +0.5
Or see this region's nucleotide sequence