Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0314

Experiment: m.b. Paraquat dichloride 0.015 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0313 and Dshi_0314 are separated by 82 nucleotidesDshi_0314 and Dshi_0315 overlap by 4 nucleotides Dshi_0313: Dshi_0313 - AAA ATPase central domain protein (RefSeq), at 301,799 to 303,109 _0313 Dshi_0314: Dshi_0314 - Camphor resistance CrcB protein (RefSeq), at 303,192 to 303,521 _0314 Dshi_0315: Dshi_0315 - pseudouridine synthase, RluA family (RefSeq), at 303,518 to 304,564 _0315 Position (kb) 303 304Strain fitness (log2 ratio) -2 -1 0 1 2at 302.267 kb on + strand, within Dshi_0313at 302.275 kb on - strand, within Dshi_0313at 302.613 kb on - strand, within Dshi_0313at 302.636 kb on - strand, within Dshi_0313at 302.638 kb on - strand, within Dshi_0313at 302.721 kb on + strand, within Dshi_0313at 302.785 kb on + strand, within Dshi_0313at 302.929 kb on + strand, within Dshi_0313at 302.932 kb on - strand, within Dshi_0313at 302.937 kb on + strand, within Dshi_0313at 302.942 kb on + strand, within Dshi_0313at 302.948 kb on + strand, within Dshi_0313at 303.029 kb on + strandat 303.408 kb on - strand, within Dshi_0314at 303.442 kb on + strand, within Dshi_0314at 303.497 kb on - strandat 303.672 kb on - strand, within Dshi_0315at 303.837 kb on - strand, within Dshi_0315at 303.981 kb on - strand, within Dshi_0315at 304.212 kb on - strand, within Dshi_0315at 304.500 kb on + strandat 304.508 kb on - strandat 304.513 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Paraquat dichloride 0.015 mg/ml
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302,267 + Dshi_0313 0.36 +0.1
302,275 - Dshi_0313 0.36 +1.0
302,613 - Dshi_0313 0.62 -0.6
302,636 - Dshi_0313 0.64 -0.0
302,638 - Dshi_0313 0.64 +0.1
302,721 + Dshi_0313 0.70 -0.0
302,785 + Dshi_0313 0.75 +0.8
302,929 + Dshi_0313 0.86 +0.4
302,932 - Dshi_0313 0.86 +1.0
302,937 + Dshi_0313 0.87 +0.6
302,942 + Dshi_0313 0.87 -1.0
302,948 + Dshi_0313 0.88 +0.1
303,029 + +1.4
303,408 - Dshi_0314 0.65 +0.5
303,442 + Dshi_0314 0.76 -1.4
303,497 - +2.3
303,672 - Dshi_0315 0.15 -0.8
303,837 - Dshi_0315 0.30 -0.5
303,981 - Dshi_0315 0.44 -0.8
304,212 - Dshi_0315 0.66 -2.0
304,500 + -0.5
304,508 - -0.4
304,513 + -0.2

Or see this region's nucleotide sequence