Experiment: m.b. Paraquat dichloride 0.015 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0228 and Dshi_0229 are separated by 4 nucleotides Dshi_0229 and Dshi_0230 are separated by 346 nucleotides Dshi_0230 and Dshi_0231 are separated by 12 nucleotides Dshi_0231 and Dshi_0232 are separated by 257 nucleotides
Dshi_0228: Dshi_0228 - pyruvate kinase (RefSeq), at 225,543 to 226,991
_0228
Dshi_0229: Dshi_0229 - hypothetical protein (RefSeq), at 226,996 to 227,220
_0229
Dshi_0230: Dshi_0230 - ribosomal protein L35 (RefSeq), at 227,567 to 227,767
_0230
Dshi_0231: Dshi_0231 - ribosomal protein L20 (RefSeq), at 227,780 to 228,145
_0231
Dshi_0232: Dshi_0232 - hypothetical protein (RefSeq), at 228,403 to 229,473
_0232
Position (kb) 227
228 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 226.889 kb on - strand at 227.010 kb on + strand at 227.016 kb on + strand at 227.209 kb on + strand at 227.217 kb on - strand at 227.242 kb on + strand at 227.274 kb on + strand at 227.326 kb on - strand at 227.467 kb on - strand at 228.121 kb on + strand at 228.124 kb on - strand at 228.129 kb on - strand at 228.129 kb on - strand at 228.177 kb on + strand at 228.177 kb on + strand at 228.185 kb on - strand at 228.209 kb on - strand at 228.229 kb on - strand at 228.241 kb on - strand at 228.251 kb on + strand at 228.286 kb on + strand at 228.294 kb on - strand at 228.294 kb on - strand at 228.298 kb on + strand at 228.369 kb on + strand at 228.376 kb on - strand at 228.377 kb on - strand at 228.378 kb on + strand at 228.386 kb on - strand at 228.391 kb on - strand at 228.400 kb on + strand at 228.400 kb on + strand at 228.408 kb on - strand at 228.431 kb on - strand at 228.436 kb on - strand at 228.444 kb on - strand at 228.457 kb on - strand at 228.458 kb on + strand at 228.466 kb on - strand at 228.479 kb on + strand at 228.522 kb on + strand, within Dshi_0232 at 228.528 kb on + strand, within Dshi_0232 at 228.540 kb on + strand, within Dshi_0232 at 228.574 kb on - strand, within Dshi_0232 at 228.610 kb on - strand, within Dshi_0232 at 228.686 kb on + strand, within Dshi_0232 at 228.710 kb on + strand, within Dshi_0232 at 228.726 kb on - strand, within Dshi_0232 at 228.735 kb on + strand, within Dshi_0232
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Paraquat dichloride 0.015 mg/ml remove 226,889 - -1.0 227,010 + -1.0 227,016 + +0.2 227,209 + +0.5 227,217 - +1.1 227,242 + -0.3 227,274 + +1.5 227,326 - +1.5 227,467 - -0.7 228,121 + +2.0 228,124 - -0.5 228,129 - +2.0 228,129 - +0.3 228,177 + -1.6 228,177 + -1.4 228,185 - -2.7 228,209 - -0.8 228,229 - -0.5 228,241 - -0.8 228,251 + +0.3 228,286 + -0.6 228,294 - -0.3 228,294 - -1.4 228,298 + +1.0 228,369 + -0.6 228,376 - -0.0 228,377 - +0.2 228,378 + +1.0 228,386 - +0.5 228,391 - -0.6 228,400 + -0.9 228,400 + +1.3 228,408 - -0.0 228,431 - +3.0 228,436 - +0.4 228,444 - +0.4 228,457 - -0.6 228,458 + -1.6 228,466 - +0.4 228,479 + -0.5 228,522 + Dshi_0232 0.11 +1.2 228,528 + Dshi_0232 0.12 +1.4 228,540 + Dshi_0232 0.13 +1.2 228,574 - Dshi_0232 0.16 -0.2 228,610 - Dshi_0232 0.19 +0.3 228,686 + Dshi_0232 0.26 +1.4 228,710 + Dshi_0232 0.29 +0.4 228,726 - Dshi_0232 0.30 -1.1 228,735 + Dshi_0232 0.31 -0.3
Or see this region's nucleotide sequence