Experiment: m.b. Paraquat dichloride 0.015 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0135 and Dshi_0136 are separated by 50 nucleotides Dshi_0136 and Dshi_0137 overlap by 4 nucleotides Dshi_0137 and Dshi_0138 are separated by 22 nucleotides
Dshi_0135: Dshi_0135 - protein of unknown function DUF482 (RefSeq), at 133,351 to 134,571
_0135
Dshi_0136: Dshi_0136 - glycerophosphoryl diester phosphodiesterase (RefSeq), at 134,622 to 135,395
_0136
Dshi_0137: Dshi_0137 - Endoribonuclease L-PSP (RefSeq), at 135,392 to 135,859
_0137
Dshi_0138: Dshi_0138 - type I secretion membrane fusion protein, HlyD family (RefSeq), at 135,882 to 137,189
_0138
Position (kb) 135
136 Strain fitness (log2 ratio) -1
0
1
2
3
4
5 at 134.485 kb on - strand at 134.603 kb on - strand at 134.779 kb on - strand, within Dshi_0136 at 134.922 kb on - strand, within Dshi_0136 at 134.991 kb on - strand, within Dshi_0136 at 135.012 kb on - strand, within Dshi_0136 at 135.098 kb on - strand, within Dshi_0136 at 135.227 kb on + strand, within Dshi_0136 at 135.381 kb on - strand at 135.584 kb on - strand, within Dshi_0137 at 135.698 kb on - strand, within Dshi_0137 at 135.739 kb on + strand, within Dshi_0137 at 135.814 kb on + strand at 135.820 kb on + strand at 135.833 kb on - strand at 135.890 kb on + strand at 135.993 kb on - strand at 136.012 kb on - strand at 136.058 kb on - strand, within Dshi_0138 at 136.225 kb on + strand, within Dshi_0138 at 136.251 kb on - strand, within Dshi_0138 at 136.251 kb on - strand, within Dshi_0138 at 136.347 kb on - strand, within Dshi_0138 at 136.492 kb on + strand, within Dshi_0138 at 136.527 kb on - strand, within Dshi_0138 at 136.566 kb on + strand, within Dshi_0138 at 136.585 kb on - strand, within Dshi_0138 at 136.724 kb on + strand, within Dshi_0138 at 136.741 kb on + strand, within Dshi_0138 at 136.781 kb on + strand, within Dshi_0138 at 136.781 kb on + strand, within Dshi_0138
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Paraquat dichloride 0.015 mg/ml remove 134,485 - -0.8 134,603 - -0.0 134,779 - Dshi_0136 0.20 +4.1 134,922 - Dshi_0136 0.39 +3.9 134,991 - Dshi_0136 0.48 +4.1 135,012 - Dshi_0136 0.50 +4.2 135,098 - Dshi_0136 0.61 +3.6 135,227 + Dshi_0136 0.78 +4.0 135,381 - +4.2 135,584 - Dshi_0137 0.41 +4.2 135,698 - Dshi_0137 0.65 +5.4 135,739 + Dshi_0137 0.74 +4.6 135,814 + +3.3 135,820 + +3.8 135,833 - +3.9 135,890 + +2.7 135,993 - +1.0 136,012 - +0.8 136,058 - Dshi_0138 0.13 +0.5 136,225 + Dshi_0138 0.26 -1.0 136,251 - Dshi_0138 0.28 +0.2 136,251 - Dshi_0138 0.28 -0.3 136,347 - Dshi_0138 0.36 -0.3 136,492 + Dshi_0138 0.47 +0.3 136,527 - Dshi_0138 0.49 +0.4 136,566 + Dshi_0138 0.52 -0.1 136,585 - Dshi_0138 0.54 +1.4 136,724 + Dshi_0138 0.64 +0.2 136,741 + Dshi_0138 0.66 +0.2 136,781 + Dshi_0138 0.69 -0.1 136,781 + Dshi_0138 0.69 +1.3
Or see this region's nucleotide sequence