Experiment: nitrate (N); with MOPS
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS02105 and PFLU_RS02110 are separated by 33 nucleotides PFLU_RS02110 and PFLU_RS02115 overlap by 11 nucleotides PFLU_RS02115 and PFLU_RS02120 are separated by 44 nucleotides
PFLU_RS02105: PFLU_RS02105 - NAD(P)/FAD-dependent oxidoreductase, at 473,706 to 474,953
_RS02105
PFLU_RS02110: PFLU_RS02110 - MMPL family transporter, at 474,987 to 477,299
_RS02110
PFLU_RS02115: PFLU_RS02115 - outer membrane lipoprotein carrier protein LolA, at 477,289 to 477,942
_RS02115
PFLU_RS02120: PFLU_RS02120 - acyl-CoA thioesterase, at 477,987 to 478,412
_RS02120
Position (kb) 474
475
476
477
478 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 474.138 kb on - strand, within PFLU_RS02105 at 474.138 kb on - strand, within PFLU_RS02105 at 474.189 kb on - strand, within PFLU_RS02105 at 474.314 kb on + strand, within PFLU_RS02105 at 474.314 kb on + strand, within PFLU_RS02105 at 474.314 kb on + strand, within PFLU_RS02105 at 474.314 kb on + strand, within PFLU_RS02105 at 474.314 kb on + strand, within PFLU_RS02105 at 474.314 kb on + strand, within PFLU_RS02105 at 474.315 kb on - strand, within PFLU_RS02105 at 474.315 kb on - strand, within PFLU_RS02105 at 474.493 kb on + strand, within PFLU_RS02105 at 474.494 kb on - strand, within PFLU_RS02105 at 474.527 kb on - strand, within PFLU_RS02105 at 474.671 kb on + strand, within PFLU_RS02105 at 474.672 kb on - strand, within PFLU_RS02105 at 474.672 kb on - strand, within PFLU_RS02105 at 474.694 kb on + strand, within PFLU_RS02105 at 474.852 kb on + strand at 474.852 kb on + strand at 474.852 kb on + strand at 474.852 kb on + strand at 474.852 kb on + strand at 474.852 kb on + strand at 474.852 kb on + strand at 474.852 kb on + strand at 474.852 kb on + strand at 474.852 kb on + strand at 474.852 kb on + strand at 474.852 kb on + strand at 474.852 kb on + strand at 474.852 kb on + strand at 474.852 kb on + strand at 474.852 kb on + strand at 474.852 kb on + strand at 474.853 kb on - strand at 474.853 kb on - strand at 474.853 kb on - strand at 474.853 kb on - strand at 474.853 kb on - strand at 474.853 kb on - strand at 474.853 kb on - strand at 474.853 kb on - strand at 474.853 kb on - strand at 474.853 kb on - strand at 474.853 kb on - strand at 474.853 kb on - strand at 474.853 kb on - strand at 474.853 kb on - strand at 474.853 kb on - strand at 474.853 kb on - strand at 474.853 kb on - strand at 474.853 kb on - strand at 474.853 kb on - strand at 474.853 kb on - strand at 474.853 kb on - strand at 474.853 kb on - strand at 474.853 kb on - strand at 474.853 kb on - strand at 474.853 kb on - strand at 474.978 kb on + strand at 474.990 kb on + strand at 474.990 kb on + strand at 474.990 kb on + strand at 474.990 kb on + strand at 474.991 kb on - strand at 474.991 kb on - strand at 475.028 kb on + strand at 475.028 kb on + strand at 475.028 kb on + strand at 475.028 kb on + strand at 475.028 kb on + strand at 475.029 kb on - strand at 475.029 kb on - strand at 475.070 kb on + strand at 475.195 kb on + strand at 475.196 kb on - strand at 475.196 kb on - strand at 475.704 kb on - strand, within PFLU_RS02110 at 475.704 kb on - strand, within PFLU_RS02110 at 475.704 kb on - strand, within PFLU_RS02110 at 475.768 kb on + strand, within PFLU_RS02110 at 475.769 kb on - strand, within PFLU_RS02110 at 475.983 kb on + strand, within PFLU_RS02110 at 475.983 kb on + strand, within PFLU_RS02110 at 475.984 kb on - strand, within PFLU_RS02110 at 475.984 kb on - strand, within PFLU_RS02110 at 476.155 kb on + strand, within PFLU_RS02110 at 476.155 kb on + strand, within PFLU_RS02110 at 476.155 kb on + strand, within PFLU_RS02110 at 476.156 kb on - strand, within PFLU_RS02110 at 476.156 kb on - strand, within PFLU_RS02110 at 476.156 kb on - strand, within PFLU_RS02110 at 476.156 kb on - strand, within PFLU_RS02110 at 476.156 kb on - strand, within PFLU_RS02110 at 476.156 kb on - strand, within PFLU_RS02110 at 476.156 kb on - strand, within PFLU_RS02110 at 476.156 kb on - strand, within PFLU_RS02110 at 476.156 kb on - strand, within PFLU_RS02110 at 476.234 kb on - strand, within PFLU_RS02110 at 476.335 kb on + strand, within PFLU_RS02110 at 476.335 kb on + strand, within PFLU_RS02110 at 476.335 kb on + strand, within PFLU_RS02110 at 476.335 kb on + strand, within PFLU_RS02110 at 476.335 kb on + strand, within PFLU_RS02110 at 476.335 kb on + strand, within PFLU_RS02110 at 476.335 kb on + strand, within PFLU_RS02110 at 476.335 kb on + strand, within PFLU_RS02110 at 476.335 kb on + strand, within PFLU_RS02110 at 476.335 kb on + strand, within PFLU_RS02110 at 476.335 kb on + strand, within PFLU_RS02110 at 476.335 kb on + strand, within PFLU_RS02110 at 476.336 kb on - strand, within PFLU_RS02110 at 476.336 kb on - strand, within PFLU_RS02110 at 476.336 kb on - strand, within PFLU_RS02110 at 476.336 kb on - strand, within PFLU_RS02110 at 476.336 kb on - strand, within PFLU_RS02110 at 476.336 kb on - strand, within PFLU_RS02110 at 476.382 kb on + strand, within PFLU_RS02110 at 476.382 kb on + strand, within PFLU_RS02110 at 476.382 kb on + strand, within PFLU_RS02110 at 476.402 kb on + strand, within PFLU_RS02110 at 476.402 kb on + strand, within PFLU_RS02110 at 476.403 kb on - strand, within PFLU_RS02110 at 476.403 kb on - strand, within PFLU_RS02110 at 476.403 kb on - strand, within PFLU_RS02110 at 476.584 kb on + strand, within PFLU_RS02110 at 476.584 kb on + strand, within PFLU_RS02110 at 476.715 kb on + strand, within PFLU_RS02110 at 476.715 kb on + strand, within PFLU_RS02110 at 476.715 kb on + strand, within PFLU_RS02110 at 476.716 kb on - strand, within PFLU_RS02110 at 476.716 kb on - strand, within PFLU_RS02110 at 476.716 kb on - strand, within PFLU_RS02110 at 476.808 kb on - strand, within PFLU_RS02110 at 476.883 kb on + strand, within PFLU_RS02110 at 476.883 kb on + strand, within PFLU_RS02110 at 476.883 kb on + strand, within PFLU_RS02110 at 476.884 kb on - strand, within PFLU_RS02110 at 476.884 kb on - strand, within PFLU_RS02110 at 476.884 kb on - strand, within PFLU_RS02110 at 476.884 kb on - strand, within PFLU_RS02110 at 476.884 kb on - strand, within PFLU_RS02110 at 476.915 kb on + strand, within PFLU_RS02110 at 476.915 kb on + strand, within PFLU_RS02110 at 476.915 kb on + strand, within PFLU_RS02110 at 477.052 kb on - strand, within PFLU_RS02110 at 477.052 kb on - strand, within PFLU_RS02110 at 477.837 kb on + strand, within PFLU_RS02115 at 477.837 kb on + strand, within PFLU_RS02115 at 477.837 kb on + strand, within PFLU_RS02115 at 477.838 kb on - strand, within PFLU_RS02115 at 477.907 kb on + strand at 477.907 kb on + strand at 477.907 kb on + strand at 477.907 kb on + strand at 477.907 kb on + strand at 477.907 kb on + strand at 477.908 kb on - strand at 477.908 kb on - strand at 477.927 kb on + strand at 477.928 kb on - strand at 478.005 kb on + strand at 478.005 kb on + strand at 478.005 kb on + strand at 478.005 kb on + strand at 478.006 kb on - strand at 478.126 kb on + strand, within PFLU_RS02120 at 478.126 kb on + strand, within PFLU_RS02120 at 478.126 kb on + strand, within PFLU_RS02120 at 478.126 kb on + strand, within PFLU_RS02120 at 478.126 kb on + strand, within PFLU_RS02120 at 478.126 kb on + strand, within PFLU_RS02120 at 478.127 kb on - strand, within PFLU_RS02120 at 478.127 kb on - strand, within PFLU_RS02120 at 478.127 kb on - strand, within PFLU_RS02120 at 478.127 kb on - strand, within PFLU_RS02120 at 478.127 kb on - strand, within PFLU_RS02120 at 478.127 kb on - strand, within PFLU_RS02120 at 478.127 kb on - strand, within PFLU_RS02120 at 478.203 kb on + strand, within PFLU_RS02120 at 478.203 kb on + strand, within PFLU_RS02120 at 478.203 kb on + strand, within PFLU_RS02120 at 478.204 kb on - strand, within PFLU_RS02120 at 478.207 kb on + strand, within PFLU_RS02120 at 478.207 kb on + strand, within PFLU_RS02120 at 478.207 kb on + strand, within PFLU_RS02120 at 478.264 kb on + strand, within PFLU_RS02120 at 478.264 kb on + strand, within PFLU_RS02120 at 478.264 kb on + strand, within PFLU_RS02120 at 478.264 kb on + strand, within PFLU_RS02120 at 478.264 kb on + strand, within PFLU_RS02120 at 478.264 kb on + strand, within PFLU_RS02120 at 478.264 kb on + strand, within PFLU_RS02120 at 478.264 kb on + strand, within PFLU_RS02120 at 478.265 kb on - strand, within PFLU_RS02120 at 478.265 kb on - strand, within PFLU_RS02120 at 478.265 kb on - strand, within PFLU_RS02120 at 478.265 kb on - strand, within PFLU_RS02120 at 478.265 kb on - strand, within PFLU_RS02120 at 478.265 kb on - strand, within PFLU_RS02120 at 478.265 kb on - strand, within PFLU_RS02120 at 478.265 kb on - strand, within PFLU_RS02120 at 478.265 kb on - strand, within PFLU_RS02120 at 478.265 kb on - strand, within PFLU_RS02120
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate (N); with MOPS remove 474,138 - PFLU_RS02105 0.35 -0.2 474,138 - PFLU_RS02105 0.35 -1.4 474,189 - PFLU_RS02105 0.39 +2.1 474,314 + PFLU_RS02105 0.49 -0.6 474,314 + PFLU_RS02105 0.49 +2.6 474,314 + PFLU_RS02105 0.49 +0.1 474,314 + PFLU_RS02105 0.49 -0.6 474,314 + PFLU_RS02105 0.49 +1.3 474,314 + PFLU_RS02105 0.49 +0.9 474,315 - PFLU_RS02105 0.49 +1.7 474,315 - PFLU_RS02105 0.49 +1.6 474,493 + PFLU_RS02105 0.63 +1.8 474,494 - PFLU_RS02105 0.63 +2.7 474,527 - PFLU_RS02105 0.66 -0.4 474,671 + PFLU_RS02105 0.77 +0.3 474,672 - PFLU_RS02105 0.77 +1.3 474,672 - PFLU_RS02105 0.77 +2.7 474,694 + PFLU_RS02105 0.79 -1.2 474,852 + -1.6 474,852 + -1.3 474,852 + +1.0 474,852 + +1.6 474,852 + +0.7 474,852 + -1.8 474,852 + -2.4 474,852 + -0.2 474,852 + -2.0 474,852 + -2.3 474,852 + +0.3 474,852 + +1.1 474,852 + +0.2 474,852 + +0.3 474,852 + -0.9 474,852 + -1.3 474,852 + -0.6 474,853 - -0.8 474,853 - -2.0 474,853 - +1.2 474,853 - +1.7 474,853 - +1.7 474,853 - +1.1 474,853 - -0.9 474,853 - -0.2 474,853 - +0.6 474,853 - -2.7 474,853 - -2.5 474,853 - +2.1 474,853 - -1.6 474,853 - -0.4 474,853 - +1.2 474,853 - -0.6 474,853 - -1.7 474,853 - +1.9 474,853 - +1.0 474,853 - +2.1 474,853 - -0.8 474,853 - -1.7 474,853 - +0.6 474,853 - -0.2 474,853 - +2.0 474,978 + -0.0 474,990 + +0.9 474,990 + -2.3 474,990 + +2.7 474,990 + -1.4 474,991 - -1.8 474,991 - +2.4 475,028 + +1.9 475,028 + +1.7 475,028 + +0.7 475,028 + -1.4 475,028 + -0.4 475,029 - +1.3 475,029 - +2.4 475,070 + +1.6 475,195 + +1.7 475,196 - -2.6 475,196 - +0.4 475,704 - PFLU_RS02110 0.31 +0.9 475,704 - PFLU_RS02110 0.31 +0.2 475,704 - PFLU_RS02110 0.31 +2.3 475,768 + PFLU_RS02110 0.34 +2.5 475,769 - PFLU_RS02110 0.34 +0.4 475,983 + PFLU_RS02110 0.43 -1.7 475,983 + PFLU_RS02110 0.43 -1.2 475,984 - PFLU_RS02110 0.43 -0.6 475,984 - PFLU_RS02110 0.43 +1.4 476,155 + PFLU_RS02110 0.50 -2.0 476,155 + PFLU_RS02110 0.50 +0.4 476,155 + PFLU_RS02110 0.50 -0.9 476,156 - PFLU_RS02110 0.51 +1.0 476,156 - PFLU_RS02110 0.51 -1.4 476,156 - PFLU_RS02110 0.51 -2.9 476,156 - PFLU_RS02110 0.51 +0.9 476,156 - PFLU_RS02110 0.51 -0.9 476,156 - PFLU_RS02110 0.51 -2.2 476,156 - PFLU_RS02110 0.51 +1.1 476,156 - PFLU_RS02110 0.51 +2.4 476,156 - PFLU_RS02110 0.51 +0.2 476,234 - PFLU_RS02110 0.54 +1.0 476,335 + PFLU_RS02110 0.58 -1.5 476,335 + PFLU_RS02110 0.58 -2.8 476,335 + PFLU_RS02110 0.58 -1.5 476,335 + PFLU_RS02110 0.58 -1.6 476,335 + PFLU_RS02110 0.58 +2.7 476,335 + PFLU_RS02110 0.58 +2.4 476,335 + PFLU_RS02110 0.58 -0.9 476,335 + PFLU_RS02110 0.58 +0.6 476,335 + PFLU_RS02110 0.58 -2.2 476,335 + PFLU_RS02110 0.58 -0.2 476,335 + PFLU_RS02110 0.58 +1.9 476,335 + PFLU_RS02110 0.58 -0.4 476,336 - PFLU_RS02110 0.58 -2.0 476,336 - PFLU_RS02110 0.58 -2.9 476,336 - PFLU_RS02110 0.58 -1.7 476,336 - PFLU_RS02110 0.58 +2.4 476,336 - PFLU_RS02110 0.58 -0.8 476,336 - PFLU_RS02110 0.58 +2.2 476,382 + PFLU_RS02110 0.60 -1.9 476,382 + PFLU_RS02110 0.60 +0.0 476,382 + PFLU_RS02110 0.60 +1.4 476,402 + PFLU_RS02110 0.61 -2.3 476,402 + PFLU_RS02110 0.61 -1.3 476,403 - PFLU_RS02110 0.61 -0.6 476,403 - PFLU_RS02110 0.61 -2.3 476,403 - PFLU_RS02110 0.61 +0.4 476,584 + PFLU_RS02110 0.69 +2.0 476,584 + PFLU_RS02110 0.69 -1.7 476,715 + PFLU_RS02110 0.75 -0.9 476,715 + PFLU_RS02110 0.75 +0.2 476,715 + PFLU_RS02110 0.75 +2.2 476,716 - PFLU_RS02110 0.75 -1.8 476,716 - PFLU_RS02110 0.75 -0.8 476,716 - PFLU_RS02110 0.75 +1.1 476,808 - PFLU_RS02110 0.79 -1.4 476,883 + PFLU_RS02110 0.82 +0.4 476,883 + PFLU_RS02110 0.82 -0.9 476,883 + PFLU_RS02110 0.82 +0.4 476,884 - PFLU_RS02110 0.82 -1.5 476,884 - PFLU_RS02110 0.82 +0.3 476,884 - PFLU_RS02110 0.82 -1.2 476,884 - PFLU_RS02110 0.82 +0.9 476,884 - PFLU_RS02110 0.82 +2.4 476,915 + PFLU_RS02110 0.83 -0.2 476,915 + PFLU_RS02110 0.83 +1.1 476,915 + PFLU_RS02110 0.83 +0.8 477,052 - PFLU_RS02110 0.89 -2.1 477,052 - PFLU_RS02110 0.89 +0.8 477,837 + PFLU_RS02115 0.84 -0.9 477,837 + PFLU_RS02115 0.84 -2.0 477,837 + PFLU_RS02115 0.84 +1.0 477,838 - PFLU_RS02115 0.84 -2.5 477,907 + +1.5 477,907 + +0.5 477,907 + -2.2 477,907 + +0.5 477,907 + -0.6 477,907 + +1.3 477,908 - +0.8 477,908 - +0.4 477,927 + +1.5 477,928 - +0.6 478,005 + +3.3 478,005 + +0.8 478,005 + +0.2 478,005 + -0.4 478,006 - -1.8 478,126 + PFLU_RS02120 0.33 +2.4 478,126 + PFLU_RS02120 0.33 +0.8 478,126 + PFLU_RS02120 0.33 +1.1 478,126 + PFLU_RS02120 0.33 -0.2 478,126 + PFLU_RS02120 0.33 -1.3 478,126 + PFLU_RS02120 0.33 -1.7 478,127 - PFLU_RS02120 0.33 +1.3 478,127 - PFLU_RS02120 0.33 -1.8 478,127 - PFLU_RS02120 0.33 -2.2 478,127 - PFLU_RS02120 0.33 -3.2 478,127 - PFLU_RS02120 0.33 -2.6 478,127 - PFLU_RS02120 0.33 +2.6 478,127 - PFLU_RS02120 0.33 -1.8 478,203 + PFLU_RS02120 0.51 -2.3 478,203 + PFLU_RS02120 0.51 +0.3 478,203 + PFLU_RS02120 0.51 -3.3 478,204 - PFLU_RS02120 0.51 -0.8 478,207 + PFLU_RS02120 0.52 +0.7 478,207 + PFLU_RS02120 0.52 +1.4 478,207 + PFLU_RS02120 0.52 +2.1 478,264 + PFLU_RS02120 0.65 +0.4 478,264 + PFLU_RS02120 0.65 -1.8 478,264 + PFLU_RS02120 0.65 -2.8 478,264 + PFLU_RS02120 0.65 +1.5 478,264 + PFLU_RS02120 0.65 +1.4 478,264 + PFLU_RS02120 0.65 -0.4 478,264 + PFLU_RS02120 0.65 -1.8 478,264 + PFLU_RS02120 0.65 -2.8 478,265 - PFLU_RS02120 0.65 -2.0 478,265 - PFLU_RS02120 0.65 -3.4 478,265 - PFLU_RS02120 0.65 +1.3 478,265 - PFLU_RS02120 0.65 +0.2 478,265 - PFLU_RS02120 0.65 -1.9 478,265 - PFLU_RS02120 0.65 -2.9 478,265 - PFLU_RS02120 0.65 -2.4 478,265 - PFLU_RS02120 0.65 -2.3 478,265 - PFLU_RS02120 0.65 -2.1 478,265 - PFLU_RS02120 0.65 +1.2
Or see this region's nucleotide sequence