Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS08180

Experiment: H2 N-free with 2mM Adenosine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	H2 N-free with 2mM Adenosine
1,501,603	+				+0.7
1,501,609	-				-1.8
1,501,613	-				-1.0
1,501,631	-				+2.1
1,501,631	-				+4.2
1,501,631	-				+0.3
1,501,632	+				-0.7
1,501,691	+				+0.3
1,501,704	-		MMJJ_RS08175	0.11	-1.1
1,501,761	-		MMJJ_RS08175	0.17	-1.0
1,501,762	+		MMJJ_RS08175	0.18	-2.2
1,501,838	+		MMJJ_RS08175	0.26	-0.3
1,501,879	+		MMJJ_RS08175	0.31	-0.6
1,501,910	+		MMJJ_RS08175	0.35	-1.7
1,501,966	-		MMJJ_RS08175	0.41	-1.2
1,502,014	+		MMJJ_RS08175	0.47	-3.1
1,502,061	+		MMJJ_RS08175	0.53	-1.8
1,502,061	+		MMJJ_RS08175	0.53	+0.5
1,502,084	+		MMJJ_RS08175	0.55	-0.1
1,502,084	+		MMJJ_RS08175	0.55	-0.3
1,502,092	-		MMJJ_RS08175	0.56	+0.4
1,502,093	+		MMJJ_RS08175	0.56	+1.1
1,502,121	+		MMJJ_RS08175	0.60	-2.5
1,502,131	-		MMJJ_RS08175	0.61	+1.4
1,502,134	+		MMJJ_RS08175	0.61	-0.8
1,502,142	-		MMJJ_RS08175	0.62	-1.8
1,502,148	-		MMJJ_RS08175	0.63	-0.3
1,502,185	+		MMJJ_RS08175	0.67	+1.4
1,502,188	-		MMJJ_RS08175	0.67	+0.1
1,502,190	-		MMJJ_RS08175	0.68	+1.7
1,502,199	-		MMJJ_RS08175	0.69	-0.9
1,502,205	-		MMJJ_RS08175	0.69	-1.2
1,502,205	-		MMJJ_RS08175	0.69	-0.5
1,502,265	+		MMJJ_RS08175	0.76	+1.9
1,502,374	-		MMJJ_RS08175	0.89	-1.3
1,502,421	-				+0.5
1,502,422	+				-3.4
1,502,422	+				+0.8
1,502,424	-				+1.1
1,502,425	+				+1.4
1,502,428	-				-2.1
1,502,428	-				+0.4
1,502,466	-				-2.5
1,502,466	-				-0.1
1,502,467	+				+1.1
1,502,467	+				-2.2
1,502,509	-				+0.2
1,502,509	-				+1.1
1,502,551	+				+0.8
1,502,551	+				+0.7
1,502,558	+				-1.5
1,502,560	-				+0.4
1,502,560	-				-1.5
1,502,560	-				+2.1
1,502,561	+				-1.0
1,502,561	+				+0.3
1,502,561	+				-0.0
1,502,572	+				-0.9
1,502,577	-				+0.5
1,502,577	-				-1.0
1,502,578	+				+1.1
1,502,626	+				+0.4
1,502,672	-		MMJJ_RS08180	0.13	-0.8
1,502,672	-		MMJJ_RS08180	0.13	-1.9
1,502,672	-		MMJJ_RS08180	0.13	-0.6
1,502,673	+		MMJJ_RS08180	0.13	-2.7
1,502,673	+		MMJJ_RS08180	0.13	-1.0
1,502,673	+		MMJJ_RS08180	0.13	+1.1
1,502,673	+		MMJJ_RS08180	0.13	-1.7
1,502,673	+		MMJJ_RS08180	0.13	-1.1
1,502,673	+		MMJJ_RS08180	0.13	-0.9
1,502,673	+		MMJJ_RS08180	0.13	-0.5
1,502,691	+		MMJJ_RS08180	0.16	-1.4
1,502,736	-		MMJJ_RS08180	0.22	-2.0
1,502,737	+		MMJJ_RS08180	0.22	-0.1
1,502,762	-		MMJJ_RS08180	0.25	-1.5
1,502,763	+		MMJJ_RS08180	0.25	-1.6
1,502,817	+		MMJJ_RS08180	0.32	-0.3
1,502,865	+		MMJJ_RS08180	0.39	-2.1
1,502,931	+		MMJJ_RS08180	0.47	-2.6
1,502,931	+		MMJJ_RS08180	0.47	-0.7
1,502,943	-		MMJJ_RS08180	0.49	+0.2
1,502,981	+		MMJJ_RS08180	0.54	-1.4
1,503,092	-		MMJJ_RS08180	0.68	-1.6
1,503,141	-		MMJJ_RS08180	0.75	-0.2
1,503,335	+				-1.2
1,503,335	+				-0.3
1,503,361	+				-2.2
1,503,362	-				-3.7
1,503,378	-				-2.4
1,503,419	+				-1.5
1,503,420	-				-0.5
1,503,420	-				-1.2
1,503,420	-				-3.4
1,503,452	-				-2.0
1,503,452	-				-2.6
1,503,453	+				-1.4
1,503,453	+				-0.2
1,503,460	-		MMJJ_RS08185	0.11	-0.5
1,503,460	-		MMJJ_RS08185	0.11	-2.2
1,503,460	-		MMJJ_RS08185	0.11	-3.2
1,503,461	+		MMJJ_RS08185	0.11	-3.4
1,503,461	+		MMJJ_RS08185	0.11	-2.6
1,503,464	-		MMJJ_RS08185	0.11	-1.2
1,503,505	+		MMJJ_RS08185	0.17	-2.6
1,503,510	-		MMJJ_RS08185	0.17	-1.1
1,503,510	-		MMJJ_RS08185	0.17	-1.6
1,503,510	-		MMJJ_RS08185	0.17	-2.4
1,503,510	-		MMJJ_RS08185	0.17	+1.4
1,503,510	-		MMJJ_RS08185	0.17	-1.3
1,503,510	-		MMJJ_RS08185	0.17	-2.4
1,503,510	-		MMJJ_RS08185	0.17	-1.7
1,503,510	-		MMJJ_RS08185	0.17	-1.6
1,503,510	-		MMJJ_RS08185	0.17	+1.1
1,503,510	-		MMJJ_RS08185	0.17	-3.9
1,503,511	+		MMJJ_RS08185	0.18	-3.2
1,503,511	+		MMJJ_RS08185	0.18	-1.3
1,503,511	+		MMJJ_RS08185	0.18	+1.6
1,503,511	+		MMJJ_RS08185	0.18	-0.3
1,503,511	+		MMJJ_RS08185	0.18	-1.3
1,503,511	+		MMJJ_RS08185	0.18	-1.4
1,503,511	+		MMJJ_RS08185	0.18	+0.3
1,503,511	+		MMJJ_RS08185	0.18	-0.7
1,503,511	+		MMJJ_RS08185	0.18	-0.9
1,503,511	+		MMJJ_RS08185	0.18	-0.6
1,503,511	+		MMJJ_RS08185	0.18	-1.1
1,503,523	+		MMJJ_RS08185	0.19	-2.9
1,503,608	-		MMJJ_RS08185	0.30	-0.9
1,503,609	+		MMJJ_RS08185	0.30	-1.6
1,503,609	+		MMJJ_RS08185	0.30	-0.4
1,503,636	+		MMJJ_RS08185	0.34	-2.6
1,503,638	-		MMJJ_RS08185	0.34	-2.5
1,503,639	+		MMJJ_RS08185	0.34	-3.4
1,503,652	-		MMJJ_RS08185	0.36	-2.5
1,503,694	-		MMJJ_RS08185	0.42	-1.4
1,503,694	-		MMJJ_RS08185	0.42	+0.8
1,503,695	+		MMJJ_RS08185	0.42	-3.6
1,503,699	+		MMJJ_RS08185	0.42	-0.4
1,503,704	-		MMJJ_RS08185	0.43	+0.1
1,503,704	-		MMJJ_RS08185	0.43	-1.8
1,503,727	-		MMJJ_RS08185	0.46	-1.5
1,503,728	+		MMJJ_RS08185	0.46	-1.6
1,503,728	+		MMJJ_RS08185	0.46	-0.1
1,503,762	+		MMJJ_RS08185	0.51	-1.7
1,503,763	-		MMJJ_RS08185	0.51	+1.1
1,503,766	-		MMJJ_RS08185	0.51	-1.6
1,503,766	-		MMJJ_RS08185	0.51	+0.6
1,503,766	-		MMJJ_RS08185	0.51	+0.6
1,503,767	+		MMJJ_RS08185	0.51	+0.0
1,503,767	+		MMJJ_RS08185	0.51	-2.1
1,503,859	-		MMJJ_RS08185	0.63	-0.8
1,503,866	-		MMJJ_RS08185	0.64	-0.8
1,503,866	-		MMJJ_RS08185	0.64	-2.0
1,503,876	+		MMJJ_RS08185	0.65	-2.5
1,503,876	+		MMJJ_RS08185	0.65	-0.1
1,503,877	-		MMJJ_RS08185	0.66	-1.2
1,503,878	+		MMJJ_RS08185	0.66	-0.8
1,503,878	+		MMJJ_RS08185	0.66	-0.7
1,503,889	+		MMJJ_RS08185	0.67	-2.4
1,503,906	+		MMJJ_RS08185	0.69	-2.5
1,503,906	+		MMJJ_RS08185	0.69	-1.2
1,503,912	+		MMJJ_RS08185	0.70	+0.3
1,503,955	-		MMJJ_RS08185	0.76	-0.9
1,503,955	-		MMJJ_RS08185	0.76	+1.4
1,503,963	+		MMJJ_RS08185	0.77	-0.1
1,503,967	-		MMJJ_RS08185	0.77	-2.5
1,503,968	+		MMJJ_RS08185	0.78	+5.5
1,503,980	-		MMJJ_RS08185	0.79	-1.1
1,504,067	-				-1.3
1,504,068	+				+1.4
1,504,071	-				-1.7
1,504,072	+				-3.2
1,504,094	-				-1.0
1,504,151	-				-0.4
1,504,151	-				-3.1
1,504,154	-				-0.7
1,504,184	-				-0.8
1,504,185	+				-2.1
1,504,192	+				-3.8
1,504,206	+				-1.2
1,504,206	+				-2.8
1,504,206	+				-2.2
1,504,209	-				-1.1
1,504,210	+				-1.9
1,504,215	-				+0.2
1,504,235	+				-0.6
1,504,277	+				+0.3
1,504,284	-				-0.4
1,504,284	-				-2.9
1,504,291	-				+1.1
1,504,295	-				+1.5
1,504,302	-				+0.4
1,504,323	+				+1.9