Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS07745

Experiment: H2 N-free with 2mM Adenosine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	H2 N-free with 2mM Adenosine
1,419,044	-		MMJJ_RS07735	0.60	+1.7
1,419,080	+				+0.4
1,419,080	+				+0.3
1,419,129	-				+1.7
1,419,129	-				+0.3
1,419,129	-				+0.6
1,419,130	+				+0.7
1,419,130	+				-3.2
1,419,130	+				-1.2
1,419,130	+				+1.8
1,419,130	+				+2.3
1,419,131	-				-0.0
1,419,131	-				+0.3
1,419,131	-				+0.4
1,419,131	-				+1.6
1,419,132	+				-0.6
1,419,132	+				-1.8
1,419,132	+				-0.2
1,419,132	+				-0.3
1,419,132	+				+0.6
1,419,132	+				-1.7
1,419,132	+				+0.4
1,419,133	-				+0.5
1,419,133	-				-1.4
1,419,133	-				+0.7
1,419,133	-				+4.1
1,419,148	-				-0.4
1,419,149	+				+1.0
1,419,158	-				+1.5
1,419,159	+				-0.2
1,419,162	-				+2.7
1,419,163	+				-0.6
1,419,165	+				+1.1
1,419,175	+				+0.4
1,419,184	-				-1.4
1,419,184	-				-0.9
1,419,185	+				-0.2
1,419,185	+				+1.1
1,419,228	+				-0.4
1,419,319	+		MMJJ_RS07740	0.16	+0.1
1,419,328	-		MMJJ_RS07740	0.17	-1.0
1,419,359	-		MMJJ_RS07740	0.21	-0.3
1,419,359	-		MMJJ_RS07740	0.21	+0.4
1,419,360	+		MMJJ_RS07740	0.21	+1.0
1,419,364	+		MMJJ_RS07740	0.21	+0.8
1,419,370	-		MMJJ_RS07740	0.22	-0.3
1,419,371	+		MMJJ_RS07740	0.22	+0.2
1,419,425	+		MMJJ_RS07740	0.29	-0.3
1,419,484	-		MMJJ_RS07740	0.36	+2.1
1,419,485	+		MMJJ_RS07740	0.36	+0.6
1,419,534	-		MMJJ_RS07740	0.43	+1.0
1,419,534	-		MMJJ_RS07740	0.43	+0.8
1,419,613	+		MMJJ_RS07740	0.52	+0.6
1,419,680	-		MMJJ_RS07740	0.61	-0.4
1,419,695	+		MMJJ_RS07740	0.63	-0.9
1,419,727	+		MMJJ_RS07740	0.67	+1.2
1,419,727	+		MMJJ_RS07740	0.67	+0.3
1,419,731	+		MMJJ_RS07740	0.67	-3.3
1,419,732	-		MMJJ_RS07740	0.67	-0.5
1,419,754	+		MMJJ_RS07740	0.70	-0.4
1,419,754	+		MMJJ_RS07740	0.70	-0.6
1,419,791	-		MMJJ_RS07740	0.75	-1.1
1,419,811	-		MMJJ_RS07740	0.77	+0.7
1,419,906	-		MMJJ_RS07740	0.89	-0.4
1,419,951	-				-0.6
1,419,956	+				+1.3
1,420,058	+				+1.0
1,420,092	+				+0.5
1,420,112	+				+1.9
1,420,121	-				+1.2
1,420,121	-				-1.7
1,420,231	+				+2.5
1,420,231	+				-0.3
1,420,232	-				+3.4
1,420,233	+				+1.3
1,420,326	-		MMJJ_RS07745	0.14	+2.4
1,420,326	-		MMJJ_RS07745	0.14	+2.9
1,420,329	-		MMJJ_RS07745	0.14	-0.1
1,420,329	-		MMJJ_RS07745	0.14	+3.3
1,420,362	+		MMJJ_RS07745	0.15	+0.3
1,420,409	-		MMJJ_RS07745	0.17	+2.3
1,420,409	-		MMJJ_RS07745	0.17	+0.8
1,420,410	+		MMJJ_RS07745	0.17	+1.2
1,420,411	-		MMJJ_RS07745	0.17	+0.8
1,420,411	-		MMJJ_RS07745	0.17	+1.5
1,420,412	+		MMJJ_RS07745	0.17	+1.5
1,420,412	+		MMJJ_RS07745	0.17	-0.1
1,420,412	+		MMJJ_RS07745	0.17	+2.2
1,420,438	+		MMJJ_RS07745	0.18	+2.8
1,420,493	-		MMJJ_RS07745	0.21	+3.1
1,420,498	-		MMJJ_RS07745	0.21	+0.9
1,420,538	-		MMJJ_RS07745	0.22	+2.2
1,420,539	+		MMJJ_RS07745	0.23	+0.5
1,420,590	-		MMJJ_RS07745	0.25	+0.1
1,420,652	-		MMJJ_RS07745	0.27	+1.4
1,420,652	-		MMJJ_RS07745	0.27	+1.3
1,420,653	+		MMJJ_RS07745	0.27	-0.2
1,420,653	+		MMJJ_RS07745	0.27	+0.5
1,420,659	+		MMJJ_RS07745	0.27	+1.6
1,420,683	-		MMJJ_RS07745	0.28	+2.4
1,420,683	-		MMJJ_RS07745	0.28	+2.3
1,420,683	-		MMJJ_RS07745	0.28	+3.6
1,420,684	+		MMJJ_RS07745	0.28	+0.2
1,420,684	+		MMJJ_RS07745	0.28	+2.5
1,420,724	+		MMJJ_RS07745	0.30	+2.2
1,420,755	-		MMJJ_RS07745	0.31	+0.0
1,420,804	-		MMJJ_RS07745	0.33	-0.4
1,420,933	-		MMJJ_RS07745	0.39	+1.1
1,420,986	-		MMJJ_RS07745	0.41	-1.5
1,420,986	-		MMJJ_RS07745	0.41	+1.3
1,420,989	-		MMJJ_RS07745	0.41	+2.6
1,420,989	-		MMJJ_RS07745	0.41	+1.8
1,421,045	+		MMJJ_RS07745	0.43	+0.9
1,421,065	-		MMJJ_RS07745	0.44	+0.5
1,421,088	+		MMJJ_RS07745	0.45	-0.3
1,421,107	-		MMJJ_RS07745	0.46	+0.7
1,421,137	+		MMJJ_RS07745	0.47	-0.4
1,421,177	-		MMJJ_RS07745	0.49	+3.3
1,421,341	-		MMJJ_RS07745	0.55	-0.6
1,421,343	-		MMJJ_RS07745	0.56	+0.6
1,421,361	-		MMJJ_RS07745	0.56	+0.3
1,421,460	-		MMJJ_RS07745	0.60	-2.0
1,421,482	-		MMJJ_RS07745	0.61	+1.3
1,421,487	-		MMJJ_RS07745	0.61	-0.1
1,421,487	-		MMJJ_RS07745	0.61	+0.4
1,421,488	+		MMJJ_RS07745	0.61	+1.8
1,421,508	-		MMJJ_RS07745	0.62	-0.5
1,421,509	+		MMJJ_RS07745	0.62	+1.1
1,421,509	+		MMJJ_RS07745	0.62	-0.3
1,421,509	+		MMJJ_RS07745	0.62	+0.9
1,421,509	+		MMJJ_RS07745	0.62	+2.6
1,421,609	+		MMJJ_RS07745	0.66	+1.4
1,421,612	-		MMJJ_RS07745	0.67	-0.2
1,421,612	-		MMJJ_RS07745	0.67	+1.2
1,421,653	+		MMJJ_RS07745	0.68	+0.5
1,421,694	+		MMJJ_RS07745	0.70	-1.7
1,421,750	-		MMJJ_RS07745	0.72	-1.0
1,421,750	-		MMJJ_RS07745	0.72	+1.4
1,421,750	-		MMJJ_RS07745	0.72	-2.3
1,421,755	+		MMJJ_RS07745	0.72	+0.8
1,421,811	-		MMJJ_RS07745	0.75	+0.6
1,421,812	+		MMJJ_RS07745	0.75	+1.1
1,421,874	-		MMJJ_RS07745	0.77	+1.7
1,421,874	-		MMJJ_RS07745	0.77	+1.5
1,421,923	-		MMJJ_RS07745	0.79	-0.2
1,421,982	+		MMJJ_RS07745	0.82	+0.5
1,422,036	-		MMJJ_RS07745	0.84	+0.6
1,422,036	-		MMJJ_RS07745	0.84	+2.0
1,422,036	-		MMJJ_RS07745	0.84	-2.9
1,422,036	-		MMJJ_RS07745	0.84	+1.9
1,422,101	-		MMJJ_RS07745	0.87	+1.4
1,422,155	-		MMJJ_RS07745	0.89	+2.3
1,422,449	+				+1.4
1,422,462	-				-0.5
1,422,468	-				+0.4
1,422,476	-				+2.4
1,422,502	+				-0.7
1,422,503	-				-0.3
1,422,506	+				+1.5
1,422,506	+				-0.1
1,422,506	+				-0.7
1,422,510	-				-3.0
1,422,516	-				+0.2
1,422,516	-				-0.9
1,422,516	-				+0.3
1,422,516	-				-0.6
1,422,516	-				-0.1
1,422,517	+				-0.5
1,422,517	+				+2.3
1,422,517	+				+1.8
1,422,517	+				-0.2
1,422,517	+				+1.7
1,422,517	+				+0.8
1,422,517	+				+0.5
1,422,517	+				+0.4
1,422,518	-				-0.6
1,422,518	-				-0.5
1,422,518	-				+0.5
1,422,519	+				+0.3
1,422,519	+				+2.1
1,422,519	+				+1.2
1,422,521	+				+0.2
1,422,521	+				-0.6
1,422,521	+				-1.7
1,422,535	+				+2.1
1,422,618	-		MMJJ_RS07750	0.39	+1.8
1,422,636	+		MMJJ_RS07750	0.48	+0.4
1,422,653	-		MMJJ_RS07750	0.56	+1.1
1,422,654	+		MMJJ_RS07750	0.57	-2.0
1,422,739	-				+0.4
1,422,747	-				-0.3
1,423,318	-				+1.4
1,423,367	-				-2.1
1,423,379	+				-0.5
1,423,381	+				-1.0