Experiment: H2 N-free with 2mM Adenosine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS06790 and MMJJ_RS06795 are separated by 101 nucleotides MMJJ_RS06795 and MMJJ_RS06800 are separated by 126 nucleotides MMJJ_RS06800 and MMJJ_RS06805 are separated by 194 nucleotides MMJJ_RS06805 and MMJJ_RS06810 are separated by 54 nucleotides
MMJJ_RS06790: MMJJ_RS06790 - nucleotidyltransferase family protein, at 1,255,502 to 1,256,551
_RS06790
MMJJ_RS06795: MMJJ_RS06795 - tRNA-Val, at 1,256,653 to 1,256,729
_RS06795
MMJJ_RS06800: MMJJ_RS06800 - prefoldin subunit alpha, at 1,256,856 to 1,257,290
_RS06800
MMJJ_RS06805: MMJJ_RS06805 - monovalent cation/H+ antiporter subunit E, at 1,257,485 to 1,257,787
_RS06805
MMJJ_RS06810: MMJJ_RS06810 - L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha, at 1,257,842 to 1,259,035
_RS06810
Position (kb) 1256
1257
1258 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6
7
8 at 1255.898 kb on - strand, within MMJJ_RS06790 at 1255.899 kb on + strand, within MMJJ_RS06790 at 1255.901 kb on + strand, within MMJJ_RS06790 at 1255.995 kb on - strand, within MMJJ_RS06790 at 1255.995 kb on - strand, within MMJJ_RS06790 at 1255.995 kb on - strand, within MMJJ_RS06790 at 1255.995 kb on - strand, within MMJJ_RS06790 at 1255.995 kb on - strand, within MMJJ_RS06790 at 1255.995 kb on - strand, within MMJJ_RS06790 at 1255.995 kb on - strand, within MMJJ_RS06790 at 1255.995 kb on - strand, within MMJJ_RS06790 at 1255.996 kb on + strand, within MMJJ_RS06790 at 1255.996 kb on + strand, within MMJJ_RS06790 at 1255.996 kb on + strand, within MMJJ_RS06790 at 1255.996 kb on + strand, within MMJJ_RS06790 at 1255.996 kb on + strand, within MMJJ_RS06790 at 1255.996 kb on + strand, within MMJJ_RS06790 at 1255.996 kb on + strand, within MMJJ_RS06790 at 1255.996 kb on + strand, within MMJJ_RS06790 at 1256.053 kb on - strand, within MMJJ_RS06790 at 1256.053 kb on - strand, within MMJJ_RS06790 at 1256.053 kb on - strand, within MMJJ_RS06790 at 1256.053 kb on - strand, within MMJJ_RS06790 at 1256.053 kb on - strand, within MMJJ_RS06790 at 1256.053 kb on - strand, within MMJJ_RS06790 at 1256.053 kb on - strand, within MMJJ_RS06790 at 1256.053 kb on - strand, within MMJJ_RS06790 at 1256.054 kb on + strand, within MMJJ_RS06790 at 1256.054 kb on + strand, within MMJJ_RS06790 at 1256.054 kb on + strand, within MMJJ_RS06790 at 1256.054 kb on + strand, within MMJJ_RS06790 at 1256.054 kb on + strand, within MMJJ_RS06790 at 1256.087 kb on - strand, within MMJJ_RS06790 at 1256.095 kb on - strand, within MMJJ_RS06790 at 1256.125 kb on - strand, within MMJJ_RS06790 at 1256.126 kb on + strand, within MMJJ_RS06790 at 1256.140 kb on - strand, within MMJJ_RS06790 at 1256.140 kb on - strand, within MMJJ_RS06790 at 1256.141 kb on + strand, within MMJJ_RS06790 at 1256.143 kb on - strand at 1256.154 kb on + strand, within MMJJ_RS06790 at 1256.154 kb on + strand, within MMJJ_RS06790 at 1256.188 kb on + strand, within MMJJ_RS06790 at 1256.203 kb on - strand, within MMJJ_RS06790 at 1256.228 kb on - strand, within MMJJ_RS06790 at 1256.229 kb on + strand, within MMJJ_RS06790 at 1256.231 kb on - strand, within MMJJ_RS06790 at 1256.283 kb on + strand, within MMJJ_RS06790 at 1256.283 kb on + strand, within MMJJ_RS06790 at 1256.283 kb on + strand, within MMJJ_RS06790 at 1256.283 kb on + strand, within MMJJ_RS06790 at 1256.287 kb on + strand, within MMJJ_RS06790 at 1256.287 kb on + strand, within MMJJ_RS06790 at 1256.327 kb on + strand, within MMJJ_RS06790 at 1256.333 kb on - strand, within MMJJ_RS06790 at 1256.333 kb on - strand, within MMJJ_RS06790 at 1256.333 kb on - strand, within MMJJ_RS06790 at 1256.334 kb on + strand, within MMJJ_RS06790 at 1256.334 kb on + strand, within MMJJ_RS06790 at 1256.334 kb on + strand, within MMJJ_RS06790 at 1256.334 kb on + strand, within MMJJ_RS06790 at 1256.334 kb on + strand, within MMJJ_RS06790 at 1256.334 kb on + strand, within MMJJ_RS06790 at 1256.334 kb on + strand, within MMJJ_RS06790 at 1256.335 kb on - strand, within MMJJ_RS06790 at 1256.335 kb on - strand, within MMJJ_RS06790 at 1256.336 kb on + strand, within MMJJ_RS06790 at 1256.370 kb on - strand, within MMJJ_RS06790 at 1256.371 kb on + strand, within MMJJ_RS06790 at 1256.371 kb on + strand, within MMJJ_RS06790 at 1256.411 kb on - strand, within MMJJ_RS06790 at 1256.412 kb on + strand, within MMJJ_RS06790 at 1256.412 kb on + strand, within MMJJ_RS06790 at 1256.508 kb on + strand at 1256.740 kb on + strand at 1256.799 kb on - strand at 1256.799 kb on - strand at 1256.800 kb on + strand at 1256.800 kb on + strand at 1256.804 kb on - strand at 1256.810 kb on + strand at 1256.812 kb on - strand at 1256.812 kb on - strand at 1256.813 kb on + strand at 1256.813 kb on + strand at 1256.813 kb on + strand at 1256.816 kb on - strand at 1256.816 kb on - strand at 1256.817 kb on + strand at 1256.817 kb on + strand at 1256.817 kb on + strand at 1256.817 kb on + strand at 1256.817 kb on + strand at 1256.858 kb on + strand at 1256.867 kb on - strand at 1257.003 kb on + strand, within MMJJ_RS06800 at 1257.018 kb on - strand, within MMJJ_RS06800 at 1257.019 kb on + strand, within MMJJ_RS06800 at 1257.024 kb on - strand, within MMJJ_RS06800 at 1257.024 kb on - strand, within MMJJ_RS06800 at 1257.025 kb on + strand, within MMJJ_RS06800 at 1257.025 kb on + strand, within MMJJ_RS06800 at 1257.025 kb on + strand, within MMJJ_RS06800 at 1257.033 kb on - strand, within MMJJ_RS06800 at 1257.033 kb on - strand, within MMJJ_RS06800 at 1257.034 kb on + strand, within MMJJ_RS06800 at 1257.034 kb on + strand, within MMJJ_RS06800 at 1257.049 kb on + strand, within MMJJ_RS06800 at 1257.049 kb on + strand, within MMJJ_RS06800 at 1257.200 kb on - strand, within MMJJ_RS06800 at 1257.201 kb on + strand, within MMJJ_RS06800 at 1257.201 kb on + strand, within MMJJ_RS06800 at 1257.201 kb on + strand, within MMJJ_RS06800 at 1257.303 kb on - strand at 1257.304 kb on + strand at 1257.304 kb on + strand at 1257.306 kb on - strand at 1257.306 kb on - strand at 1257.307 kb on + strand at 1257.307 kb on + strand at 1257.327 kb on + strand at 1257.336 kb on - strand at 1257.337 kb on + strand at 1257.337 kb on + strand at 1257.349 kb on - strand at 1257.375 kb on - strand at 1257.376 kb on + strand at 1257.376 kb on + strand at 1257.383 kb on - strand at 1257.384 kb on + strand at 1257.390 kb on - strand at 1257.420 kb on - strand at 1257.420 kb on - strand at 1257.420 kb on - strand at 1257.421 kb on + strand at 1257.421 kb on + strand at 1257.421 kb on + strand at 1257.421 kb on + strand at 1257.422 kb on - strand at 1257.422 kb on - strand at 1257.422 kb on - strand at 1257.422 kb on - strand at 1257.422 kb on - strand at 1257.422 kb on - strand at 1257.422 kb on - strand at 1257.422 kb on - strand at 1257.422 kb on - strand at 1257.422 kb on - strand at 1257.422 kb on - strand at 1257.423 kb on + strand at 1257.423 kb on + strand at 1257.423 kb on + strand at 1257.423 kb on + strand at 1257.423 kb on + strand at 1257.423 kb on + strand at 1257.423 kb on + strand at 1257.425 kb on + strand at 1257.425 kb on + strand at 1257.425 kb on + strand at 1257.425 kb on + strand at 1257.425 kb on + strand at 1257.425 kb on + strand at 1257.427 kb on + strand at 1257.427 kb on + strand at 1257.430 kb on - strand at 1257.483 kb on + strand at 1257.555 kb on - strand, within MMJJ_RS06805 at 1257.556 kb on + strand, within MMJJ_RS06805 at 1257.556 kb on + strand, within MMJJ_RS06805 at 1257.615 kb on - strand, within MMJJ_RS06805 at 1257.724 kb on + strand, within MMJJ_RS06805 at 1257.747 kb on - strand, within MMJJ_RS06805 at 1257.764 kb on - strand at 1257.764 kb on - strand at 1257.768 kb on - strand at 1257.769 kb on + strand at 1257.785 kb on - strand at 1257.808 kb on + strand at 1257.841 kb on - strand at 1257.859 kb on - strand at 1257.859 kb on - strand at 1257.860 kb on + strand at 1257.860 kb on + strand at 1257.945 kb on - strand at 1257.945 kb on - strand at 1257.946 kb on + strand at 1257.950 kb on + strand at 1257.952 kb on - strand at 1257.953 kb on + strand at 1257.953 kb on + strand at 1257.988 kb on - strand, within MMJJ_RS06810 at 1257.989 kb on + strand, within MMJJ_RS06810 at 1257.993 kb on - strand, within MMJJ_RS06810 at 1258.017 kb on - strand, within MMJJ_RS06810 at 1258.018 kb on + strand, within MMJJ_RS06810 at 1258.020 kb on + strand, within MMJJ_RS06810 at 1258.039 kb on - strand, within MMJJ_RS06810 at 1258.056 kb on - strand, within MMJJ_RS06810 at 1258.056 kb on - strand, within MMJJ_RS06810 at 1258.093 kb on - strand, within MMJJ_RS06810 at 1258.127 kb on - strand, within MMJJ_RS06810 at 1258.176 kb on - strand, within MMJJ_RS06810 at 1258.177 kb on + strand, within MMJJ_RS06810 at 1258.180 kb on - strand, within MMJJ_RS06810 at 1258.180 kb on - strand, within MMJJ_RS06810 at 1258.203 kb on - strand, within MMJJ_RS06810 at 1258.211 kb on + strand, within MMJJ_RS06810 at 1258.217 kb on + strand, within MMJJ_RS06810 at 1258.260 kb on - strand, within MMJJ_RS06810 at 1258.270 kb on + strand, within MMJJ_RS06810
Per-strain Table
Position Strand Gene LocusTag Fraction H2 N-free with 2mM Adenosine remove 1,255,898 - MMJJ_RS06790 0.38 -0.1 1,255,899 + MMJJ_RS06790 0.38 -0.9 1,255,901 + MMJJ_RS06790 0.38 +0.1 1,255,995 - MMJJ_RS06790 0.47 +0.1 1,255,995 - MMJJ_RS06790 0.47 -2.2 1,255,995 - MMJJ_RS06790 0.47 -1.0 1,255,995 - MMJJ_RS06790 0.47 -0.6 1,255,995 - MMJJ_RS06790 0.47 +1.1 1,255,995 - MMJJ_RS06790 0.47 -2.8 1,255,995 - MMJJ_RS06790 0.47 -2.2 1,255,995 - MMJJ_RS06790 0.47 -1.1 1,255,996 + MMJJ_RS06790 0.47 +1.0 1,255,996 + MMJJ_RS06790 0.47 +0.3 1,255,996 + MMJJ_RS06790 0.47 -2.3 1,255,996 + MMJJ_RS06790 0.47 +1.6 1,255,996 + MMJJ_RS06790 0.47 -1.5 1,255,996 + MMJJ_RS06790 0.47 -1.3 1,255,996 + MMJJ_RS06790 0.47 -0.7 1,255,996 + MMJJ_RS06790 0.47 -0.3 1,256,053 - MMJJ_RS06790 0.52 -1.0 1,256,053 - MMJJ_RS06790 0.52 -0.9 1,256,053 - MMJJ_RS06790 0.52 -1.0 1,256,053 - MMJJ_RS06790 0.52 +1.4 1,256,053 - MMJJ_RS06790 0.52 +0.3 1,256,053 - MMJJ_RS06790 0.52 -0.8 1,256,053 - MMJJ_RS06790 0.52 +0.3 1,256,053 - MMJJ_RS06790 0.52 -1.0 1,256,054 + MMJJ_RS06790 0.53 +0.7 1,256,054 + MMJJ_RS06790 0.53 -2.1 1,256,054 + MMJJ_RS06790 0.53 -1.1 1,256,054 + MMJJ_RS06790 0.53 -1.5 1,256,054 + MMJJ_RS06790 0.53 +0.0 1,256,087 - MMJJ_RS06790 0.56 -0.6 1,256,095 - MMJJ_RS06790 0.56 -0.3 1,256,125 - MMJJ_RS06790 0.59 +0.2 1,256,126 + MMJJ_RS06790 0.59 -1.0 1,256,140 - MMJJ_RS06790 0.61 -0.9 1,256,140 - MMJJ_RS06790 0.61 -3.1 1,256,141 + MMJJ_RS06790 0.61 -1.6 1,256,143 - +0.8 1,256,154 + MMJJ_RS06790 0.62 -2.0 1,256,154 + MMJJ_RS06790 0.62 -1.4 1,256,188 + MMJJ_RS06790 0.65 -1.5 1,256,203 - MMJJ_RS06790 0.67 -1.4 1,256,228 - MMJJ_RS06790 0.69 -2.2 1,256,229 + MMJJ_RS06790 0.69 -0.3 1,256,231 - MMJJ_RS06790 0.69 -0.5 1,256,283 + MMJJ_RS06790 0.74 +0.6 1,256,283 + MMJJ_RS06790 0.74 -1.5 1,256,283 + MMJJ_RS06790 0.74 -0.7 1,256,283 + MMJJ_RS06790 0.74 -1.9 1,256,287 + MMJJ_RS06790 0.75 -1.5 1,256,287 + MMJJ_RS06790 0.75 -0.5 1,256,327 + MMJJ_RS06790 0.79 -0.5 1,256,333 - MMJJ_RS06790 0.79 -1.2 1,256,333 - MMJJ_RS06790 0.79 -0.2 1,256,333 - MMJJ_RS06790 0.79 +1.4 1,256,334 + MMJJ_RS06790 0.79 -2.0 1,256,334 + MMJJ_RS06790 0.79 +1.0 1,256,334 + MMJJ_RS06790 0.79 +0.9 1,256,334 + MMJJ_RS06790 0.79 +2.2 1,256,334 + MMJJ_RS06790 0.79 -0.5 1,256,334 + MMJJ_RS06790 0.79 -1.6 1,256,334 + MMJJ_RS06790 0.79 +0.5 1,256,335 - MMJJ_RS06790 0.79 -0.5 1,256,335 - MMJJ_RS06790 0.79 +0.4 1,256,336 + MMJJ_RS06790 0.79 -1.2 1,256,370 - MMJJ_RS06790 0.83 -0.4 1,256,371 + MMJJ_RS06790 0.83 -2.0 1,256,371 + MMJJ_RS06790 0.83 +0.1 1,256,411 - MMJJ_RS06790 0.87 +0.0 1,256,412 + MMJJ_RS06790 0.87 -0.8 1,256,412 + MMJJ_RS06790 0.87 -1.4 1,256,508 + -0.5 1,256,740 + +0.8 1,256,799 - +2.9 1,256,799 - +0.9 1,256,800 + +1.4 1,256,800 + -0.6 1,256,804 - -1.1 1,256,810 + +1.1 1,256,812 - -0.5 1,256,812 - +0.3 1,256,813 + -1.4 1,256,813 + +0.1 1,256,813 + -0.5 1,256,816 - +8.2 1,256,816 - -0.4 1,256,817 + -1.8 1,256,817 + -0.5 1,256,817 + -0.6 1,256,817 + -0.1 1,256,817 + -0.3 1,256,858 + -1.8 1,256,867 - +0.1 1,257,003 + MMJJ_RS06800 0.34 -0.3 1,257,018 - MMJJ_RS06800 0.37 -1.9 1,257,019 + MMJJ_RS06800 0.37 -0.3 1,257,024 - MMJJ_RS06800 0.39 -0.6 1,257,024 - MMJJ_RS06800 0.39 -0.8 1,257,025 + MMJJ_RS06800 0.39 -1.3 1,257,025 + MMJJ_RS06800 0.39 -0.9 1,257,025 + MMJJ_RS06800 0.39 -1.1 1,257,033 - MMJJ_RS06800 0.41 -1.4 1,257,033 - MMJJ_RS06800 0.41 -3.1 1,257,034 + MMJJ_RS06800 0.41 -1.3 1,257,034 + MMJJ_RS06800 0.41 -1.3 1,257,049 + MMJJ_RS06800 0.44 +0.1 1,257,049 + MMJJ_RS06800 0.44 -2.0 1,257,200 - MMJJ_RS06800 0.79 +0.1 1,257,201 + MMJJ_RS06800 0.79 -1.6 1,257,201 + MMJJ_RS06800 0.79 +3.4 1,257,201 + MMJJ_RS06800 0.79 -0.5 1,257,303 - -1.3 1,257,304 + -1.3 1,257,304 + +0.2 1,257,306 - +0.4 1,257,306 - -0.4 1,257,307 + -0.6 1,257,307 + -0.7 1,257,327 + -0.4 1,257,336 - -1.5 1,257,337 + +1.2 1,257,337 + -0.6 1,257,349 - -1.9 1,257,375 - +2.2 1,257,376 + -0.8 1,257,376 + -0.2 1,257,383 - -2.0 1,257,384 + -0.9 1,257,390 - +2.4 1,257,420 - +0.4 1,257,420 - -1.6 1,257,420 - -1.1 1,257,421 + -1.7 1,257,421 + -2.7 1,257,421 + -2.1 1,257,421 + +0.3 1,257,422 - -1.5 1,257,422 - -0.9 1,257,422 - -1.0 1,257,422 - -0.3 1,257,422 - -0.8 1,257,422 - -1.7 1,257,422 - -2.0 1,257,422 - -2.9 1,257,422 - -1.4 1,257,422 - -2.8 1,257,422 - -0.9 1,257,423 + -1.4 1,257,423 + -1.5 1,257,423 + -0.8 1,257,423 + +0.2 1,257,423 + -1.5 1,257,423 + -1.1 1,257,423 + -1.8 1,257,425 + -1.2 1,257,425 + -0.6 1,257,425 + -0.2 1,257,425 + +1.8 1,257,425 + +0.7 1,257,425 + -0.5 1,257,427 + +0.2 1,257,427 + +1.4 1,257,430 - -0.4 1,257,483 + -1.6 1,257,555 - MMJJ_RS06805 0.23 -0.4 1,257,556 + MMJJ_RS06805 0.23 -0.1 1,257,556 + MMJJ_RS06805 0.23 +0.5 1,257,615 - MMJJ_RS06805 0.43 +0.2 1,257,724 + MMJJ_RS06805 0.79 -0.9 1,257,747 - MMJJ_RS06805 0.86 -1.5 1,257,764 - -0.3 1,257,764 - +0.3 1,257,768 - -1.5 1,257,769 + -1.6 1,257,785 - -1.8 1,257,808 + -1.2 1,257,841 - +1.4 1,257,859 - +0.4 1,257,859 - -1.4 1,257,860 + -0.8 1,257,860 + -1.9 1,257,945 - -0.8 1,257,945 - -1.1 1,257,946 + -2.2 1,257,950 + +0.1 1,257,952 - +0.0 1,257,953 + -1.0 1,257,953 + -0.6 1,257,988 - MMJJ_RS06810 0.12 -1.3 1,257,989 + MMJJ_RS06810 0.12 +0.1 1,257,993 - MMJJ_RS06810 0.13 -0.1 1,258,017 - MMJJ_RS06810 0.15 -0.2 1,258,018 + MMJJ_RS06810 0.15 -0.6 1,258,020 + MMJJ_RS06810 0.15 -2.0 1,258,039 - MMJJ_RS06810 0.16 +4.1 1,258,056 - MMJJ_RS06810 0.18 +1.0 1,258,056 - MMJJ_RS06810 0.18 -1.9 1,258,093 - MMJJ_RS06810 0.21 +1.4 1,258,127 - MMJJ_RS06810 0.24 +1.6 1,258,176 - MMJJ_RS06810 0.28 -0.9 1,258,177 + MMJJ_RS06810 0.28 -0.7 1,258,180 - MMJJ_RS06810 0.28 +1.2 1,258,180 - MMJJ_RS06810 0.28 -2.8 1,258,203 - MMJJ_RS06810 0.30 +3.0 1,258,211 + MMJJ_RS06810 0.31 +0.9 1,258,217 + MMJJ_RS06810 0.31 -0.8 1,258,260 - MMJJ_RS06810 0.35 +0.3 1,258,270 + MMJJ_RS06810 0.36 +1.4
Or see this region's nucleotide sequence