Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS04460

Experiment: H2 N-free with 2mM Adenosine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMJJ_RS04455 and MMJJ_RS04460 are separated by 72 nucleotidesMMJJ_RS04460 and MMJJ_RS04465 are separated by 11 nucleotidesMMJJ_RS04465 and MMJJ_RS04470 are separated by 108 nucleotides MMJJ_RS04455: MMJJ_RS04455 - phosphomethylpyrimidine synthase, at 829,883 to 831,163 _RS04455 MMJJ_RS04460: MMJJ_RS04460 - L-threonylcarbamoyladenylate synthase, at 831,236 to 831,856 _RS04460 MMJJ_RS04465: MMJJ_RS04465 - MTAP family purine nucleoside phosphorylase, at 831,868 to 832,629 _RS04465 MMJJ_RS04470: MMJJ_RS04470 - CTP-dependent riboflavin kinase, at 832,738 to 833,121 _RS04470 Position (kb) 831 832Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 830.249 kb on - strand, within MMJJ_RS04455at 830.858 kb on - strand, within MMJJ_RS04455at 830.904 kb on - strand, within MMJJ_RS04455at 831.135 kb on - strandat 831.136 kb on + strandat 831.164 kb on - strandat 831.165 kb on + strandat 831.165 kb on + strandat 831.166 kb on - strandat 831.166 kb on - strandat 831.166 kb on - strandat 831.166 kb on - strandat 831.188 kb on + strandat 831.190 kb on - strandat 831.193 kb on + strandat 831.193 kb on + strandat 831.246 kb on + strandat 831.254 kb on - strandat 831.477 kb on + strand, within MMJJ_RS04460at 831.731 kb on + strand, within MMJJ_RS04460at 831.830 kb on + strandat 831.856 kb on - strandat 831.856 kb on - strandat 831.869 kb on - strandat 831.870 kb on + strandat 831.870 kb on + strandat 831.927 kb on + strandat 831.931 kb on + strandat 831.931 kb on + strandat 831.933 kb on - strandat 831.933 kb on - strandat 831.934 kb on + strandat 832.014 kb on - strand, within MMJJ_RS04465at 832.081 kb on - strand, within MMJJ_RS04465at 832.082 kb on + strand, within MMJJ_RS04465at 832.087 kb on - strand, within MMJJ_RS04465at 832.088 kb on + strand, within MMJJ_RS04465at 832.205 kb on - strand, within MMJJ_RS04465at 832.206 kb on + strand, within MMJJ_RS04465at 832.206 kb on + strand, within MMJJ_RS04465at 832.243 kb on - strand, within MMJJ_RS04465at 832.243 kb on - strand, within MMJJ_RS04465at 832.244 kb on + strand, within MMJJ_RS04465at 832.256 kb on - strand, within MMJJ_RS04465at 832.268 kb on + strand, within MMJJ_RS04465at 832.268 kb on + strand, within MMJJ_RS04465at 832.305 kb on + strand, within MMJJ_RS04465at 832.329 kb on - strand, within MMJJ_RS04465at 832.330 kb on + strand, within MMJJ_RS04465at 832.372 kb on - strand, within MMJJ_RS04465at 832.372 kb on - strand, within MMJJ_RS04465at 832.372 kb on - strand, within MMJJ_RS04465at 832.372 kb on - strand, within MMJJ_RS04465at 832.373 kb on + strand, within MMJJ_RS04465at 832.373 kb on + strand, within MMJJ_RS04465at 832.384 kb on - strand, within MMJJ_RS04465at 832.385 kb on + strand, within MMJJ_RS04465at 832.385 kb on + strand, within MMJJ_RS04465at 832.402 kb on - strand, within MMJJ_RS04465at 832.403 kb on + strand, within MMJJ_RS04465at 832.403 kb on + strand, within MMJJ_RS04465at 832.412 kb on + strand, within MMJJ_RS04465at 832.435 kb on - strand, within MMJJ_RS04465at 832.462 kb on - strand, within MMJJ_RS04465at 832.462 kb on - strand, within MMJJ_RS04465at 832.462 kb on - strand, within MMJJ_RS04465at 832.504 kb on - strand, within MMJJ_RS04465at 832.504 kb on - strand, within MMJJ_RS04465at 832.513 kb on - strand, within MMJJ_RS04465at 832.513 kb on - strand, within MMJJ_RS04465at 832.513 kb on - strand, within MMJJ_RS04465at 832.513 kb on - strand, within MMJJ_RS04465at 832.514 kb on + strand, within MMJJ_RS04465at 832.535 kb on + strand, within MMJJ_RS04465at 832.543 kb on + strand, within MMJJ_RS04465at 832.568 kb on + strandat 832.588 kb on - strandat 832.589 kb on + strandat 832.589 kb on + strandat 832.589 kb on + strandat 832.591 kb on - strandat 832.632 kb on + strandat 832.652 kb on - strandat 832.652 kb on - strandat 832.652 kb on - strandat 832.656 kb on - strandat 832.657 kb on + strandat 832.677 kb on - strandat 832.677 kb on - strandat 832.682 kb on + strandat 832.694 kb on - strandat 832.717 kb on - strandat 832.718 kb on + strandat 832.719 kb on - strandat 832.719 kb on - strandat 832.719 kb on - strandat 832.719 kb on - strandat 832.719 kb on - strandat 832.720 kb on + strandat 832.720 kb on + strandat 832.720 kb on + strandat 832.721 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction H2 N-free with 2mM Adenosine
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830,249 - MMJJ_RS04455 0.29 +1.6
830,858 - MMJJ_RS04455 0.76 +0.2
830,904 - MMJJ_RS04455 0.80 +1.6
831,135 - -2.8
831,136 + -2.5
831,164 - +1.8
831,165 + -1.0
831,165 + -3.3
831,166 - -1.0
831,166 - -0.3
831,166 - +1.6
831,166 - +1.2
831,188 + +1.2
831,190 - +2.2
831,193 + +0.3
831,193 + -1.7
831,246 + +1.7
831,254 - -2.9
831,477 + MMJJ_RS04460 0.39 -1.0
831,731 + MMJJ_RS04460 0.80 -1.4
831,830 + +1.2
831,856 - +2.2
831,856 - -0.1
831,869 - -2.3
831,870 + -0.5
831,870 + -2.3
831,927 + +1.6
831,931 + +0.7
831,931 + +2.0
831,933 - +3.0
831,933 - +2.9
831,934 + -0.1
832,014 - MMJJ_RS04465 0.19 -1.3
832,081 - MMJJ_RS04465 0.28 -1.7
832,082 + MMJJ_RS04465 0.28 +1.6
832,087 - MMJJ_RS04465 0.29 +5.6
832,088 + MMJJ_RS04465 0.29 +2.8
832,205 - MMJJ_RS04465 0.44 +4.5
832,206 + MMJJ_RS04465 0.44 +4.6
832,206 + MMJJ_RS04465 0.44 +3.7
832,243 - MMJJ_RS04465 0.49 +2.8
832,243 - MMJJ_RS04465 0.49 -2.3
832,244 + MMJJ_RS04465 0.49 -1.5
832,256 - MMJJ_RS04465 0.51 -1.9
832,268 + MMJJ_RS04465 0.52 +0.4
832,268 + MMJJ_RS04465 0.52 +0.6
832,305 + MMJJ_RS04465 0.57 +1.0
832,329 - MMJJ_RS04465 0.60 +2.5
832,330 + MMJJ_RS04465 0.61 +2.3
832,372 - MMJJ_RS04465 0.66 +5.2
832,372 - MMJJ_RS04465 0.66 +3.2
832,372 - MMJJ_RS04465 0.66 +3.1
832,372 - MMJJ_RS04465 0.66 +2.3
832,373 + MMJJ_RS04465 0.66 -0.5
832,373 + MMJJ_RS04465 0.66 +3.1
832,384 - MMJJ_RS04465 0.68 +1.4
832,385 + MMJJ_RS04465 0.68 +2.4
832,385 + MMJJ_RS04465 0.68 +1.8
832,402 - MMJJ_RS04465 0.70 -0.2
832,403 + MMJJ_RS04465 0.70 +0.4
832,403 + MMJJ_RS04465 0.70 +2.3
832,412 + MMJJ_RS04465 0.71 +1.3
832,435 - MMJJ_RS04465 0.74 +5.7
832,462 - MMJJ_RS04465 0.78 -1.2
832,462 - MMJJ_RS04465 0.78 -0.1
832,462 - MMJJ_RS04465 0.78 +1.1
832,504 - MMJJ_RS04465 0.83 +3.3
832,504 - MMJJ_RS04465 0.83 +1.6
832,513 - MMJJ_RS04465 0.85 +0.5
832,513 - MMJJ_RS04465 0.85 +4.4
832,513 - MMJJ_RS04465 0.85 -0.8
832,513 - MMJJ_RS04465 0.85 +2.3
832,514 + MMJJ_RS04465 0.85 +0.8
832,535 + MMJJ_RS04465 0.88 +3.6
832,543 + MMJJ_RS04465 0.89 +2.6
832,568 + -1.2
832,588 - -0.2
832,589 + +2.0
832,589 + -2.3
832,589 + +2.9
832,591 - +1.8
832,632 + +2.3
832,652 - +1.6
832,652 - +0.4
832,652 - -0.3
832,656 - -2.1
832,657 + +2.2
832,677 - -0.2
832,677 - -3.3
832,682 + +0.1
832,694 - -1.6
832,717 - +0.2
832,718 + -1.1
832,719 - +0.6
832,719 - +0.6
832,719 - -0.8
832,719 - -0.0
832,719 - +0.3
832,720 + -0.0
832,720 + -0.0
832,720 + +0.8
832,721 - -0.5

Or see this region's nucleotide sequence