Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS00900

Experiment: H2 N-free with 2mM Adenosine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMJJ_RS00895 and MMJJ_RS00900 are separated by 152 nucleotidesMMJJ_RS00900 and MMJJ_RS00905 are separated by 283 nucleotides MMJJ_RS00895: MMJJ_RS00895 - coenzyme F420 hydrogenase subunit beta, at 171,320 to 172,168 _RS00895 MMJJ_RS00900: MMJJ_RS00900 - PC4/YdbC family ssDNA-binding protein, at 172,321 to 172,542 _RS00900 MMJJ_RS00905: MMJJ_RS00905 - right-handed parallel beta-helix repeat-containing protein, at 172,826 to 174,760 _RS00905 Position (kb) 172 173Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 171.338 kb on - strandat 171.340 kb on - strandat 171.340 kb on - strandat 171.341 kb on + strandat 171.341 kb on + strandat 171.341 kb on + strandat 171.341 kb on + strandat 171.349 kb on - strandat 171.349 kb on - strandat 171.349 kb on - strandat 171.350 kb on + strandat 171.350 kb on + strandat 171.350 kb on + strandat 171.352 kb on + strandat 171.352 kb on + strandat 171.352 kb on + strandat 171.352 kb on + strandat 171.352 kb on + strandat 171.354 kb on + strandat 171.371 kb on + strandat 171.378 kb on - strandat 171.419 kb on - strand, within MMJJ_RS00895at 171.419 kb on - strand, within MMJJ_RS00895at 171.425 kb on - strand, within MMJJ_RS00895at 171.425 kb on - strandat 171.425 kb on - strand, within MMJJ_RS00895at 171.425 kb on - strand, within MMJJ_RS00895at 171.425 kb on - strand, within MMJJ_RS00895at 171.425 kb on - strand, within MMJJ_RS00895at 171.426 kb on + strand, within MMJJ_RS00895at 171.447 kb on - strand, within MMJJ_RS00895at 171.485 kb on + strand, within MMJJ_RS00895at 171.541 kb on - strand, within MMJJ_RS00895at 171.542 kb on + strand, within MMJJ_RS00895at 171.545 kb on - strand, within MMJJ_RS00895at 171.547 kb on - strand, within MMJJ_RS00895at 171.548 kb on + strand, within MMJJ_RS00895at 171.564 kb on - strand, within MMJJ_RS00895at 171.565 kb on + strand, within MMJJ_RS00895at 171.565 kb on + strand, within MMJJ_RS00895at 171.565 kb on + strand, within MMJJ_RS00895at 171.574 kb on + strand, within MMJJ_RS00895at 171.586 kb on + strand, within MMJJ_RS00895at 171.646 kb on - strand, within MMJJ_RS00895at 171.647 kb on + strand, within MMJJ_RS00895at 171.654 kb on - strand, within MMJJ_RS00895at 171.677 kb on + strand, within MMJJ_RS00895at 171.682 kb on - strand, within MMJJ_RS00895at 171.682 kb on - strand, within MMJJ_RS00895at 171.683 kb on + strand, within MMJJ_RS00895at 171.714 kb on - strand, within MMJJ_RS00895at 171.760 kb on + strand, within MMJJ_RS00895at 171.849 kb on - strand, within MMJJ_RS00895at 171.850 kb on + strand, within MMJJ_RS00895at 171.850 kb on + strand, within MMJJ_RS00895at 171.881 kb on - strand, within MMJJ_RS00895at 171.881 kb on - strand, within MMJJ_RS00895at 171.882 kb on + strand, within MMJJ_RS00895at 171.882 kb on + strand, within MMJJ_RS00895at 171.882 kb on + strand, within MMJJ_RS00895at 171.882 kb on + strand, within MMJJ_RS00895at 171.903 kb on - strand, within MMJJ_RS00895at 171.903 kb on - strand, within MMJJ_RS00895at 171.903 kb on - strand, within MMJJ_RS00895at 171.903 kb on - strand, within MMJJ_RS00895at 171.903 kb on - strand, within MMJJ_RS00895at 171.903 kb on - strand, within MMJJ_RS00895at 171.903 kb on - strand, within MMJJ_RS00895at 171.903 kb on - strand, within MMJJ_RS00895at 171.903 kb on - strand, within MMJJ_RS00895at 171.904 kb on + strand, within MMJJ_RS00895at 171.904 kb on + strand, within MMJJ_RS00895at 171.904 kb on + strand, within MMJJ_RS00895at 171.904 kb on + strand, within MMJJ_RS00895at 171.904 kb on + strand, within MMJJ_RS00895at 171.904 kb on + strand, within MMJJ_RS00895at 171.904 kb on + strand, within MMJJ_RS00895at 171.907 kb on - strand, within MMJJ_RS00895at 171.907 kb on - strand, within MMJJ_RS00895at 171.908 kb on + strand, within MMJJ_RS00895at 171.908 kb on + strand, within MMJJ_RS00895at 171.914 kb on - strand, within MMJJ_RS00895at 171.914 kb on - strand, within MMJJ_RS00895at 171.915 kb on + strand, within MMJJ_RS00895at 171.915 kb on + strand, within MMJJ_RS00895at 171.934 kb on - strand, within MMJJ_RS00895at 171.935 kb on + strand, within MMJJ_RS00895at 171.985 kb on - strand, within MMJJ_RS00895at 171.986 kb on + strand, within MMJJ_RS00895at 171.986 kb on + strand, within MMJJ_RS00895at 172.008 kb on + strand, within MMJJ_RS00895at 172.008 kb on + strand, within MMJJ_RS00895at 172.062 kb on - strand, within MMJJ_RS00895at 172.080 kb on - strand, within MMJJ_RS00895at 172.080 kb on - strand, within MMJJ_RS00895at 172.080 kb on - strand, within MMJJ_RS00895at 172.080 kb on - strand, within MMJJ_RS00895at 172.080 kb on - strand, within MMJJ_RS00895at 172.163 kb on - strandat 172.178 kb on - strandat 172.199 kb on - strandat 172.199 kb on - strandat 172.205 kb on - strandat 172.209 kb on - strandat 172.209 kb on - strandat 172.209 kb on - strandat 172.209 kb on - strandat 172.210 kb on + strandat 172.210 kb on + strandat 172.212 kb on - strandat 172.264 kb on - strandat 172.282 kb on - strandat 172.282 kb on - strandat 172.293 kb on - strandat 172.294 kb on + strandat 172.298 kb on + strandat 172.298 kb on + strandat 172.343 kb on - strandat 172.343 kb on - strandat 172.362 kb on + strand, within MMJJ_RS00900at 172.366 kb on - strand, within MMJJ_RS00900at 172.398 kb on + strand, within MMJJ_RS00900at 172.432 kb on - strand, within MMJJ_RS00900at 172.437 kb on - strand, within MMJJ_RS00900at 172.438 kb on + strand, within MMJJ_RS00900at 172.439 kb on - strand, within MMJJ_RS00900at 172.439 kb on - strand, within MMJJ_RS00900at 172.487 kb on - strand, within MMJJ_RS00900at 172.540 kb on - strandat 172.541 kb on + strandat 172.562 kb on + strandat 172.570 kb on - strandat 172.605 kb on - strandat 172.611 kb on - strandat 172.615 kb on + strandat 172.615 kb on + strandat 172.648 kb on - strandat 172.649 kb on + strandat 172.654 kb on + strandat 172.716 kb on - strandat 172.717 kb on + strandat 172.740 kb on - strandat 172.753 kb on - strandat 172.754 kb on + strandat 172.759 kb on - strandat 172.760 kb on + strandat 172.761 kb on - strandat 172.761 kb on - strandat 172.761 kb on - strandat 172.761 kb on - strandat 172.777 kb on - strandat 172.801 kb on - strandat 172.801 kb on - strandat 172.803 kb on - strandat 172.804 kb on + strandat 172.804 kb on + strandat 172.804 kb on - strandat 172.836 kb on - strandat 172.837 kb on + strandat 172.837 kb on + strandat 172.839 kb on - strandat 172.839 kb on - strandat 172.840 kb on + strandat 172.840 kb on + strandat 172.840 kb on + strandat 172.849 kb on - strandat 172.849 kb on - strandat 172.849 kb on - strandat 172.885 kb on + strandat 172.890 kb on + strandat 172.909 kb on - strandat 172.913 kb on - strandat 172.914 kb on + strandat 172.914 kb on + strandat 172.914 kb on + strandat 172.914 kb on + strandat 172.932 kb on - strandat 172.933 kb on + strandat 172.950 kb on + strandat 172.953 kb on + strandat 172.956 kb on - strandat 172.989 kb on - strandat 173.008 kb on + strandat 173.013 kb on - strandat 173.098 kb on - strand, within MMJJ_RS00905at 173.129 kb on - strand, within MMJJ_RS00905at 173.134 kb on - strand, within MMJJ_RS00905at 173.173 kb on + strand, within MMJJ_RS00905at 173.173 kb on + strand, within MMJJ_RS00905at 173.183 kb on - strand, within MMJJ_RS00905at 173.183 kb on - strand, within MMJJ_RS00905at 173.183 kb on - strand, within MMJJ_RS00905at 173.183 kb on - strand, within MMJJ_RS00905at 173.183 kb on - strand, within MMJJ_RS00905at 173.183 kb on - strand, within MMJJ_RS00905at 173.183 kb on - strand, within MMJJ_RS00905at 173.183 kb on - strand, within MMJJ_RS00905at 173.184 kb on + strand, within MMJJ_RS00905at 173.184 kb on + strand, within MMJJ_RS00905at 173.184 kb on + strand, within MMJJ_RS00905at 173.187 kb on - strand, within MMJJ_RS00905at 173.187 kb on - strand, within MMJJ_RS00905at 173.187 kb on - strand, within MMJJ_RS00905at 173.187 kb on - strand, within MMJJ_RS00905at 173.187 kb on - strand, within MMJJ_RS00905at 173.188 kb on + strand, within MMJJ_RS00905at 173.188 kb on + strand, within MMJJ_RS00905at 173.188 kb on + strand, within MMJJ_RS00905at 173.188 kb on + strand, within MMJJ_RS00905at 173.188 kb on + strand, within MMJJ_RS00905at 173.188 kb on + strand, within MMJJ_RS00905at 173.188 kb on + strand, within MMJJ_RS00905at 173.188 kb on + strand, within MMJJ_RS00905at 173.188 kb on + strand, within MMJJ_RS00905at 173.226 kb on - strand, within MMJJ_RS00905at 173.226 kb on - strand, within MMJJ_RS00905at 173.227 kb on + strand, within MMJJ_RS00905at 173.227 kb on + strand, within MMJJ_RS00905at 173.230 kb on - strand, within MMJJ_RS00905at 173.277 kb on - strand, within MMJJ_RS00905at 173.277 kb on - strand, within MMJJ_RS00905at 173.278 kb on + strand, within MMJJ_RS00905at 173.281 kb on - strand, within MMJJ_RS00905at 173.282 kb on + strand, within MMJJ_RS00905at 173.285 kb on - strand, within MMJJ_RS00905at 173.292 kb on - strand, within MMJJ_RS00905at 173.292 kb on - strand, within MMJJ_RS00905at 173.303 kb on + strand, within MMJJ_RS00905at 173.330 kb on - strand, within MMJJ_RS00905at 173.384 kb on + strand, within MMJJ_RS00905at 173.419 kb on + strand, within MMJJ_RS00905at 173.447 kb on - strand, within MMJJ_RS00905at 173.491 kb on - strand, within MMJJ_RS00905at 173.504 kb on - strand, within MMJJ_RS00905at 173.523 kb on + strand, within MMJJ_RS00905at 173.527 kb on + strand, within MMJJ_RS00905

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Per-strain Table

Position Strand Gene LocusTag Fraction H2 N-free with 2mM Adenosine
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171,338 - +2.0
171,340 - -1.1
171,340 - +1.5
171,341 + -1.0
171,341 + -0.6
171,341 + +0.8
171,341 + +0.6
171,349 - +0.8
171,349 - -1.7
171,349 - +0.7
171,350 + -1.8
171,350 + -0.2
171,350 + +1.0
171,352 + +0.1
171,352 + +3.0
171,352 + -1.1
171,352 + -1.6
171,352 + +1.2
171,354 + -0.5
171,371 + -2.0
171,378 - +1.2
171,419 - MMJJ_RS00895 0.12 -0.0
171,419 - MMJJ_RS00895 0.12 -2.6
171,425 - MMJJ_RS00895 0.12 -1.7
171,425 - +2.4
171,425 - MMJJ_RS00895 0.12 -0.2
171,425 - MMJJ_RS00895 0.12 +1.3
171,425 - MMJJ_RS00895 0.12 +1.0
171,425 - MMJJ_RS00895 0.12 -1.7
171,426 + MMJJ_RS00895 0.12 -1.4
171,447 - MMJJ_RS00895 0.15 +1.0
171,485 + MMJJ_RS00895 0.19 -2.2
171,541 - MMJJ_RS00895 0.26 -1.1
171,542 + MMJJ_RS00895 0.26 +1.2
171,545 - MMJJ_RS00895 0.27 -0.1
171,547 - MMJJ_RS00895 0.27 +1.7
171,548 + MMJJ_RS00895 0.27 -0.2
171,564 - MMJJ_RS00895 0.29 +2.3
171,565 + MMJJ_RS00895 0.29 -1.1
171,565 + MMJJ_RS00895 0.29 +0.6
171,565 + MMJJ_RS00895 0.29 -0.2
171,574 + MMJJ_RS00895 0.30 -0.9
171,586 + MMJJ_RS00895 0.31 +1.6
171,646 - MMJJ_RS00895 0.38 +2.8
171,647 + MMJJ_RS00895 0.39 -0.1
171,654 - MMJJ_RS00895 0.39 -0.5
171,677 + MMJJ_RS00895 0.42 +0.8
171,682 - MMJJ_RS00895 0.43 +2.9
171,682 - MMJJ_RS00895 0.43 +0.8
171,683 + MMJJ_RS00895 0.43 -0.8
171,714 - MMJJ_RS00895 0.46 +0.6
171,760 + MMJJ_RS00895 0.52 +0.6
171,849 - MMJJ_RS00895 0.62 -0.3
171,850 + MMJJ_RS00895 0.62 -1.6
171,850 + MMJJ_RS00895 0.62 -0.4
171,881 - MMJJ_RS00895 0.66 +0.4
171,881 - MMJJ_RS00895 0.66 -1.4
171,882 + MMJJ_RS00895 0.66 +2.1
171,882 + MMJJ_RS00895 0.66 -1.7
171,882 + MMJJ_RS00895 0.66 -0.2
171,882 + MMJJ_RS00895 0.66 +0.5
171,903 - MMJJ_RS00895 0.69 -1.9
171,903 - MMJJ_RS00895 0.69 -0.3
171,903 - MMJJ_RS00895 0.69 -0.5
171,903 - MMJJ_RS00895 0.69 -3.0
171,903 - MMJJ_RS00895 0.69 -1.2
171,903 - MMJJ_RS00895 0.69 +0.5
171,903 - MMJJ_RS00895 0.69 +1.0
171,903 - MMJJ_RS00895 0.69 +1.4
171,903 - MMJJ_RS00895 0.69 +1.1
171,904 + MMJJ_RS00895 0.69 +0.9
171,904 + MMJJ_RS00895 0.69 -0.9
171,904 + MMJJ_RS00895 0.69 -0.3
171,904 + MMJJ_RS00895 0.69 -0.0
171,904 + MMJJ_RS00895 0.69 +1.0
171,904 + MMJJ_RS00895 0.69 -2.2
171,904 + MMJJ_RS00895 0.69 +1.5
171,907 - MMJJ_RS00895 0.69 -1.1
171,907 - MMJJ_RS00895 0.69 -3.8
171,908 + MMJJ_RS00895 0.69 -0.3
171,908 + MMJJ_RS00895 0.69 -0.4
171,914 - MMJJ_RS00895 0.70 +0.7
171,914 - MMJJ_RS00895 0.70 -0.2
171,915 + MMJJ_RS00895 0.70 +1.2
171,915 + MMJJ_RS00895 0.70 +1.1
171,934 - MMJJ_RS00895 0.72 -1.4
171,935 + MMJJ_RS00895 0.72 +1.1
171,985 - MMJJ_RS00895 0.78 -1.4
171,986 + MMJJ_RS00895 0.78 +0.4
171,986 + MMJJ_RS00895 0.78 -2.1
172,008 + MMJJ_RS00895 0.81 -1.1
172,008 + MMJJ_RS00895 0.81 -1.6
172,062 - MMJJ_RS00895 0.87 +1.6
172,080 - MMJJ_RS00895 0.90 -0.4
172,080 - MMJJ_RS00895 0.90 -1.2
172,080 - MMJJ_RS00895 0.90 +0.8
172,080 - MMJJ_RS00895 0.90 -0.9
172,080 - MMJJ_RS00895 0.90 -0.9
172,163 - -2.1
172,178 - -0.1
172,199 - -2.8
172,199 - -0.7
172,205 - -1.0
172,209 - -0.3
172,209 - -0.6
172,209 - +0.9
172,209 - -2.9
172,210 + -1.8
172,210 + -1.9
172,212 - +1.6
172,264 - -0.3
172,282 - +0.2
172,282 - +0.4
172,293 - +2.2
172,294 + +0.5
172,298 + -1.3
172,298 + -0.5
172,343 - -0.2
172,343 - -0.1
172,362 + MMJJ_RS00900 0.18 +0.6
172,366 - MMJJ_RS00900 0.20 -1.5
172,398 + MMJJ_RS00900 0.35 -1.1
172,432 - MMJJ_RS00900 0.50 -2.0
172,437 - MMJJ_RS00900 0.52 -1.7
172,438 + MMJJ_RS00900 0.53 -1.5
172,439 - MMJJ_RS00900 0.53 -0.6
172,439 - MMJJ_RS00900 0.53 -0.4
172,487 - MMJJ_RS00900 0.75 -2.2
172,540 - +0.2
172,541 + -1.3
172,562 + +0.9
172,570 - -0.7
172,605 - +0.2
172,611 - -4.1
172,615 + -1.1
172,615 + -1.6
172,648 - -1.9
172,649 + +1.8
172,654 + -0.2
172,716 - +2.2
172,717 + +2.0
172,740 - -0.3
172,753 - -2.2
172,754 + -2.3
172,759 - -1.1
172,760 + +0.9
172,761 - -0.2
172,761 - -1.2
172,761 - +0.6
172,761 - -0.4
172,777 - -0.8
172,801 - -0.5
172,801 - +0.2
172,803 - -1.0
172,804 + -0.6
172,804 + -0.8
172,804 - -0.2
172,836 - -1.2
172,837 + +1.8
172,837 + -2.1
172,839 - -1.5
172,839 - +1.1
172,840 + -0.1
172,840 + -0.8
172,840 + -0.3
172,849 - -1.2
172,849 - +1.0
172,849 - +1.5
172,885 + -0.8
172,890 + +2.2
172,909 - +0.1
172,913 - +1.1
172,914 + +0.7
172,914 + -2.1
172,914 + +4.5
172,914 + +1.2
172,932 - +0.1
172,933 + +0.2
172,950 + -0.7
172,953 + -1.3
172,956 - +0.4
172,989 - -1.3
173,008 + +2.4
173,013 - +0.4
173,098 - MMJJ_RS00905 0.14 -1.8
173,129 - MMJJ_RS00905 0.16 -0.4
173,134 - MMJJ_RS00905 0.16 -1.7
173,173 + MMJJ_RS00905 0.18 +2.1
173,173 + MMJJ_RS00905 0.18 -0.0
173,183 - MMJJ_RS00905 0.18 -0.6
173,183 - MMJJ_RS00905 0.18 -0.7
173,183 - MMJJ_RS00905 0.18 -0.9
173,183 - MMJJ_RS00905 0.18 +0.1
173,183 - MMJJ_RS00905 0.18 -2.4
173,183 - MMJJ_RS00905 0.18 +1.4
173,183 - MMJJ_RS00905 0.18 +1.1
173,183 - MMJJ_RS00905 0.18 -0.3
173,184 + MMJJ_RS00905 0.19 +2.4
173,184 + MMJJ_RS00905 0.19 -1.0
173,184 + MMJJ_RS00905 0.19 -1.1
173,187 - MMJJ_RS00905 0.19 -0.6
173,187 - MMJJ_RS00905 0.19 -0.2
173,187 - MMJJ_RS00905 0.19 +1.0
173,187 - MMJJ_RS00905 0.19 +0.8
173,187 - MMJJ_RS00905 0.19 +1.0
173,188 + MMJJ_RS00905 0.19 -2.9
173,188 + MMJJ_RS00905 0.19 -2.3
173,188 + MMJJ_RS00905 0.19 -1.1
173,188 + MMJJ_RS00905 0.19 -0.4
173,188 + MMJJ_RS00905 0.19 +0.8
173,188 + MMJJ_RS00905 0.19 -0.7
173,188 + MMJJ_RS00905 0.19 -1.5
173,188 + MMJJ_RS00905 0.19 -1.2
173,188 + MMJJ_RS00905 0.19 -1.2
173,226 - MMJJ_RS00905 0.21 +2.2
173,226 - MMJJ_RS00905 0.21 +0.3
173,227 + MMJJ_RS00905 0.21 +0.4
173,227 + MMJJ_RS00905 0.21 -0.4
173,230 - MMJJ_RS00905 0.21 +1.1
173,277 - MMJJ_RS00905 0.23 +0.8
173,277 - MMJJ_RS00905 0.23 -1.2
173,278 + MMJJ_RS00905 0.23 +0.7
173,281 - MMJJ_RS00905 0.24 -0.2
173,282 + MMJJ_RS00905 0.24 -1.3
173,285 - MMJJ_RS00905 0.24 -0.6
173,292 - MMJJ_RS00905 0.24 -0.5
173,292 - MMJJ_RS00905 0.24 -0.2
173,303 + MMJJ_RS00905 0.25 -0.4
173,330 - MMJJ_RS00905 0.26 -0.2
173,384 + MMJJ_RS00905 0.29 -0.5
173,419 + MMJJ_RS00905 0.31 +1.2
173,447 - MMJJ_RS00905 0.32 +1.4
173,491 - MMJJ_RS00905 0.34 -4.4
173,504 - MMJJ_RS00905 0.35 +1.4
173,523 + MMJJ_RS00905 0.36 -0.9
173,527 + MMJJ_RS00905 0.36 +1.0

Or see this region's nucleotide sequence