Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS00680

Experiment: H2 N-free with 2mM Adenosine

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMMJJ_RS00675 and MMJJ_RS00680 are separated by 16 nucleotidesMMJJ_RS00680 and MMJJ_RS00685 are separated by 22 nucleotides MMJJ_RS00675: MMJJ_RS00675 - nitrogenase, at 131,123 to 132,499 _RS00675 MMJJ_RS00680: MMJJ_RS00680 - nitrogenase iron-molybdenum cofactor biosynthesis protein NifE, at 132,516 to 133,958 _RS00680 MMJJ_RS00685: MMJJ_RS00685 - nitrogenase molybdenum-iron protein subunit beta, at 133,981 to 135,369 _RS00685 Position (kb) 132 133 134Strain fitness (log2 ratio) -3 -2 -1 0 1at 131.565 kb on + strand, within MMJJ_RS00675at 131.656 kb on - strand, within MMJJ_RS00675at 131.656 kb on - strand, within MMJJ_RS00675at 131.656 kb on - strand, within MMJJ_RS00675at 131.660 kb on - strand, within MMJJ_RS00675at 131.660 kb on - strand, within MMJJ_RS00675at 131.672 kb on - strand, within MMJJ_RS00675at 131.686 kb on - strand, within MMJJ_RS00675at 131.732 kb on - strand, within MMJJ_RS00675at 131.733 kb on + strand, within MMJJ_RS00675at 131.738 kb on - strand, within MMJJ_RS00675at 131.742 kb on - strand, within MMJJ_RS00675at 131.743 kb on + strand, within MMJJ_RS00675at 131.806 kb on - strand, within MMJJ_RS00675at 131.912 kb on + strand, within MMJJ_RS00675at 131.945 kb on - strand, within MMJJ_RS00675at 131.945 kb on - strand, within MMJJ_RS00675at 132.018 kb on + strand, within MMJJ_RS00675at 132.068 kb on + strand, within MMJJ_RS00675at 132.097 kb on - strand, within MMJJ_RS00675at 132.097 kb on - strand, within MMJJ_RS00675at 132.097 kb on - strand, within MMJJ_RS00675at 132.098 kb on + strand, within MMJJ_RS00675at 132.098 kb on + strand, within MMJJ_RS00675at 132.098 kb on + strand, within MMJJ_RS00675at 132.098 kb on + strand, within MMJJ_RS00675at 132.098 kb on + strand, within MMJJ_RS00675at 132.098 kb on + strand, within MMJJ_RS00675at 132.098 kb on + strand, within MMJJ_RS00675at 132.098 kb on + strand, within MMJJ_RS00675at 132.103 kb on - strand, within MMJJ_RS00675at 132.103 kb on - strand, within MMJJ_RS00675at 132.203 kb on + strand, within MMJJ_RS00675at 132.215 kb on + strand, within MMJJ_RS00675at 132.215 kb on + strand, within MMJJ_RS00675at 132.219 kb on + strand, within MMJJ_RS00675at 132.224 kb on - strand, within MMJJ_RS00675at 132.225 kb on + strand, within MMJJ_RS00675at 132.227 kb on - strand, within MMJJ_RS00675at 132.372 kb on - strandat 132.372 kb on - strandat 132.372 kb on - strandat 132.372 kb on - strandat 132.373 kb on + strandat 132.373 kb on + strandat 132.399 kb on + strandat 132.399 kb on + strandat 132.399 kb on + strandat 132.438 kb on + strandat 132.438 kb on + strandat 132.458 kb on - strandat 132.458 kb on - strandat 132.459 kb on + strandat 132.459 kb on + strandat 132.473 kb on + strandat 132.502 kb on - strandat 132.688 kb on + strand, within MMJJ_RS00680at 132.700 kb on - strand, within MMJJ_RS00680at 132.717 kb on - strand, within MMJJ_RS00680at 132.718 kb on + strand, within MMJJ_RS00680at 132.718 kb on + strand, within MMJJ_RS00680at 132.751 kb on + strand, within MMJJ_RS00680at 132.755 kb on - strand, within MMJJ_RS00680at 132.755 kb on - strand, within MMJJ_RS00680at 132.755 kb on - strand, within MMJJ_RS00680at 132.756 kb on + strand, within MMJJ_RS00680at 132.756 kb on + strand, within MMJJ_RS00680at 132.776 kb on - strand, within MMJJ_RS00680at 132.777 kb on + strand, within MMJJ_RS00680at 132.887 kb on + strand, within MMJJ_RS00680at 132.888 kb on - strand, within MMJJ_RS00680at 132.889 kb on + strand, within MMJJ_RS00680at 132.903 kb on + strand, within MMJJ_RS00680at 132.941 kb on - strand, within MMJJ_RS00680at 133.035 kb on + strand, within MMJJ_RS00680at 133.104 kb on - strand, within MMJJ_RS00680at 133.108 kb on - strand, within MMJJ_RS00680at 133.109 kb on + strand, within MMJJ_RS00680at 133.134 kb on - strand, within MMJJ_RS00680at 133.134 kb on - strand, within MMJJ_RS00680at 133.136 kb on - strand, within MMJJ_RS00680at 133.136 kb on - strand, within MMJJ_RS00680at 133.137 kb on + strand, within MMJJ_RS00680at 133.141 kb on + strand, within MMJJ_RS00680at 133.146 kb on + strand, within MMJJ_RS00680at 133.146 kb on + strand, within MMJJ_RS00680at 133.190 kb on - strand, within MMJJ_RS00680at 133.203 kb on - strand, within MMJJ_RS00680at 133.203 kb on - strand, within MMJJ_RS00680at 133.227 kb on - strand, within MMJJ_RS00680at 133.235 kb on - strand, within MMJJ_RS00680at 133.275 kb on - strand, within MMJJ_RS00680at 133.277 kb on - strand, within MMJJ_RS00680at 133.277 kb on - strand, within MMJJ_RS00680at 133.277 kb on - strand, within MMJJ_RS00680at 133.284 kb on + strand, within MMJJ_RS00680at 133.323 kb on - strand, within MMJJ_RS00680at 133.323 kb on - strand, within MMJJ_RS00680at 133.327 kb on - strand, within MMJJ_RS00680at 133.374 kb on + strand, within MMJJ_RS00680at 133.439 kb on - strand, within MMJJ_RS00680at 133.440 kb on + strand, within MMJJ_RS00680at 133.452 kb on + strand, within MMJJ_RS00680at 133.452 kb on + strand, within MMJJ_RS00680at 133.473 kb on - strand, within MMJJ_RS00680at 133.473 kb on - strand, within MMJJ_RS00680at 133.476 kb on - strand, within MMJJ_RS00680at 133.497 kb on - strand, within MMJJ_RS00680at 133.520 kb on - strand, within MMJJ_RS00680at 133.521 kb on + strand, within MMJJ_RS00680at 133.567 kb on + strand, within MMJJ_RS00680at 133.617 kb on + strand, within MMJJ_RS00680at 133.625 kb on - strand, within MMJJ_RS00680at 133.669 kb on + strand, within MMJJ_RS00680at 133.689 kb on - strand, within MMJJ_RS00680at 133.689 kb on - strand, within MMJJ_RS00680at 133.690 kb on + strand, within MMJJ_RS00680at 133.733 kb on + strand, within MMJJ_RS00680at 133.784 kb on - strand, within MMJJ_RS00680at 133.784 kb on - strand, within MMJJ_RS00680at 133.836 kb on - strandat 133.847 kb on - strandat 133.890 kb on - strandat 133.891 kb on + strandat 133.891 kb on + strandat 133.911 kb on + strandat 133.958 kb on - strandat 133.959 kb on + strandat 133.961 kb on - strandat 133.961 kb on - strandat 133.961 kb on - strandat 133.962 kb on + strandat 133.982 kb on - strandat 133.983 kb on + strandat 133.983 kb on + strandat 134.015 kb on - strandat 134.038 kb on + strandat 134.130 kb on + strand, within MMJJ_RS00685at 134.218 kb on - strand, within MMJJ_RS00685at 134.219 kb on + strand, within MMJJ_RS00685at 134.219 kb on + strand, within MMJJ_RS00685at 134.219 kb on + strand, within MMJJ_RS00685at 134.228 kb on + strand, within MMJJ_RS00685at 134.228 kb on + strand, within MMJJ_RS00685at 134.319 kb on - strand, within MMJJ_RS00685at 134.319 kb on - strand, within MMJJ_RS00685at 134.319 kb on - strand, within MMJJ_RS00685at 134.320 kb on + strand, within MMJJ_RS00685at 134.323 kb on - strand, within MMJJ_RS00685at 134.323 kb on - strand, within MMJJ_RS00685at 134.324 kb on + strand, within MMJJ_RS00685at 134.324 kb on + strand, within MMJJ_RS00685at 134.324 kb on + strand, within MMJJ_RS00685at 134.372 kb on + strand, within MMJJ_RS00685at 134.378 kb on + strand, within MMJJ_RS00685at 134.378 kb on + strand, within MMJJ_RS00685at 134.393 kb on - strand, within MMJJ_RS00685at 134.393 kb on - strand, within MMJJ_RS00685at 134.417 kb on + strand, within MMJJ_RS00685at 134.420 kb on - strand, within MMJJ_RS00685at 134.420 kb on - strand, within MMJJ_RS00685at 134.421 kb on + strand, within MMJJ_RS00685at 134.421 kb on + strand, within MMJJ_RS00685at 134.473 kb on - strand, within MMJJ_RS00685at 134.474 kb on + strand, within MMJJ_RS00685at 134.474 kb on + strand, within MMJJ_RS00685at 134.533 kb on + strand, within MMJJ_RS00685at 134.580 kb on + strand, within MMJJ_RS00685at 134.615 kb on - strand, within MMJJ_RS00685at 134.616 kb on + strand, within MMJJ_RS00685at 134.619 kb on - strand, within MMJJ_RS00685at 134.634 kb on - strand, within MMJJ_RS00685at 134.634 kb on - strand, within MMJJ_RS00685at 134.635 kb on + strand, within MMJJ_RS00685at 134.704 kb on + strand, within MMJJ_RS00685at 134.749 kb on + strand, within MMJJ_RS00685at 134.754 kb on - strand, within MMJJ_RS00685at 134.755 kb on + strand, within MMJJ_RS00685at 134.755 kb on + strand, within MMJJ_RS00685at 134.758 kb on - strand, within MMJJ_RS00685at 134.759 kb on + strand, within MMJJ_RS00685at 134.764 kb on + strand, within MMJJ_RS00685at 134.790 kb on - strand, within MMJJ_RS00685at 134.790 kb on - strand, within MMJJ_RS00685at 134.791 kb on + strand, within MMJJ_RS00685at 134.791 kb on + strand, within MMJJ_RS00685at 134.791 kb on + strand, within MMJJ_RS00685at 134.821 kb on - strand, within MMJJ_RS00685at 134.839 kb on + strand, within MMJJ_RS00685at 134.839 kb on + strand, within MMJJ_RS00685at 134.843 kb on + strand, within MMJJ_RS00685at 134.875 kb on - strand, within MMJJ_RS00685at 134.880 kb on - strand, within MMJJ_RS00685at 134.881 kb on + strand, within MMJJ_RS00685at 134.884 kb on - strand, within MMJJ_RS00685at 134.885 kb on + strand, within MMJJ_RS00685at 134.896 kb on - strand, within MMJJ_RS00685at 134.905 kb on + strand, within MMJJ_RS00685at 134.909 kb on - strand, within MMJJ_RS00685at 134.943 kb on - strand, within MMJJ_RS00685at 134.944 kb on + strand, within MMJJ_RS00685at 134.946 kb on - strand, within MMJJ_RS00685at 134.947 kb on + strand, within MMJJ_RS00685

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction H2 N-free with 2mM Adenosine
remove
131,565 + MMJJ_RS00675 0.32 -2.3
131,656 - MMJJ_RS00675 0.39 -1.6
131,656 - MMJJ_RS00675 0.39 -1.0
131,656 - MMJJ_RS00675 0.39 -0.1
131,660 - MMJJ_RS00675 0.39 -0.7
131,660 - MMJJ_RS00675 0.39 -3.5
131,672 - MMJJ_RS00675 0.40 -2.3
131,686 - MMJJ_RS00675 0.41 -1.9
131,732 - MMJJ_RS00675 0.44 -1.4
131,733 + MMJJ_RS00675 0.44 -3.6
131,738 - MMJJ_RS00675 0.45 +0.6
131,742 - MMJJ_RS00675 0.45 +0.3
131,743 + MMJJ_RS00675 0.45 -1.2
131,806 - MMJJ_RS00675 0.50 +1.1
131,912 + MMJJ_RS00675 0.57 -2.0
131,945 - MMJJ_RS00675 0.60 -1.4
131,945 - MMJJ_RS00675 0.60 -0.8
132,018 + MMJJ_RS00675 0.65 -0.0
132,068 + MMJJ_RS00675 0.69 -0.3
132,097 - MMJJ_RS00675 0.71 -1.7
132,097 - MMJJ_RS00675 0.71 -0.7
132,097 - MMJJ_RS00675 0.71 -3.7
132,098 + MMJJ_RS00675 0.71 +0.9
132,098 + MMJJ_RS00675 0.71 -1.4
132,098 + MMJJ_RS00675 0.71 +0.2
132,098 + MMJJ_RS00675 0.71 -0.8
132,098 + MMJJ_RS00675 0.71 -1.1
132,098 + MMJJ_RS00675 0.71 +0.2
132,098 + MMJJ_RS00675 0.71 -0.7
132,098 + MMJJ_RS00675 0.71 -0.2
132,103 - MMJJ_RS00675 0.71 -1.6
132,103 - MMJJ_RS00675 0.71 -1.8
132,203 + MMJJ_RS00675 0.78 -2.6
132,215 + MMJJ_RS00675 0.79 -0.0
132,215 + MMJJ_RS00675 0.79 +0.7
132,219 + MMJJ_RS00675 0.80 -1.3
132,224 - MMJJ_RS00675 0.80 -0.9
132,225 + MMJJ_RS00675 0.80 -1.3
132,227 - MMJJ_RS00675 0.80 +1.2
132,372 - -0.8
132,372 - -1.2
132,372 - -1.9
132,372 - -0.1
132,373 + -2.0
132,373 + -1.0
132,399 + -1.1
132,399 + -0.2
132,399 + -1.3
132,438 + -1.1
132,438 + -0.3
132,458 - +0.2
132,458 - +0.0
132,459 + +0.9
132,459 + -0.7
132,473 + -1.8
132,502 - +1.1
132,688 + MMJJ_RS00680 0.12 -0.7
132,700 - MMJJ_RS00680 0.13 -1.5
132,717 - MMJJ_RS00680 0.14 -0.7
132,718 + MMJJ_RS00680 0.14 +0.8
132,718 + MMJJ_RS00680 0.14 -0.2
132,751 + MMJJ_RS00680 0.16 +0.1
132,755 - MMJJ_RS00680 0.17 -0.3
132,755 - MMJJ_RS00680 0.17 -1.4
132,755 - MMJJ_RS00680 0.17 -1.2
132,756 + MMJJ_RS00680 0.17 -1.7
132,756 + MMJJ_RS00680 0.17 -2.2
132,776 - MMJJ_RS00680 0.18 -2.3
132,777 + MMJJ_RS00680 0.18 -0.1
132,887 + MMJJ_RS00680 0.26 -0.9
132,888 - MMJJ_RS00680 0.26 -1.1
132,889 + MMJJ_RS00680 0.26 -1.5
132,903 + MMJJ_RS00680 0.27 -2.7
132,941 - MMJJ_RS00680 0.29 +0.1
133,035 + MMJJ_RS00680 0.36 -1.4
133,104 - MMJJ_RS00680 0.41 +0.4
133,108 - MMJJ_RS00680 0.41 +0.1
133,109 + MMJJ_RS00680 0.41 -0.4
133,134 - MMJJ_RS00680 0.43 -0.9
133,134 - MMJJ_RS00680 0.43 -1.3
133,136 - MMJJ_RS00680 0.43 -1.1
133,136 - MMJJ_RS00680 0.43 -0.1
133,137 + MMJJ_RS00680 0.43 -0.2
133,141 + MMJJ_RS00680 0.43 -1.4
133,146 + MMJJ_RS00680 0.44 -0.3
133,146 + MMJJ_RS00680 0.44 -0.2
133,190 - MMJJ_RS00680 0.47 +0.2
133,203 - MMJJ_RS00680 0.48 -1.2
133,203 - MMJJ_RS00680 0.48 -2.2
133,227 - MMJJ_RS00680 0.49 -1.3
133,235 - MMJJ_RS00680 0.50 +0.0
133,275 - MMJJ_RS00680 0.53 -1.8
133,277 - MMJJ_RS00680 0.53 -0.3
133,277 - MMJJ_RS00680 0.53 -2.0
133,277 - MMJJ_RS00680 0.53 -2.6
133,284 + MMJJ_RS00680 0.53 -2.7
133,323 - MMJJ_RS00680 0.56 +0.4
133,323 - MMJJ_RS00680 0.56 -1.9
133,327 - MMJJ_RS00680 0.56 -2.9
133,374 + MMJJ_RS00680 0.59 -1.4
133,439 - MMJJ_RS00680 0.64 -0.6
133,440 + MMJJ_RS00680 0.64 +0.8
133,452 + MMJJ_RS00680 0.65 -0.5
133,452 + MMJJ_RS00680 0.65 -0.2
133,473 - MMJJ_RS00680 0.66 -1.2
133,473 - MMJJ_RS00680 0.66 -1.6
133,476 - MMJJ_RS00680 0.67 -0.0
133,497 - MMJJ_RS00680 0.68 -0.1
133,520 - MMJJ_RS00680 0.70 -1.5
133,521 + MMJJ_RS00680 0.70 +0.2
133,567 + MMJJ_RS00680 0.73 -0.5
133,617 + MMJJ_RS00680 0.76 -3.6
133,625 - MMJJ_RS00680 0.77 -0.6
133,669 + MMJJ_RS00680 0.80 -1.7
133,689 - MMJJ_RS00680 0.81 -1.6
133,689 - MMJJ_RS00680 0.81 -1.6
133,690 + MMJJ_RS00680 0.81 +1.1
133,733 + MMJJ_RS00680 0.84 -1.5
133,784 - MMJJ_RS00680 0.88 -1.7
133,784 - MMJJ_RS00680 0.88 +0.2
133,836 - -0.7
133,847 - -1.2
133,890 - -0.8
133,891 + -0.0
133,891 + -2.0
133,911 + +1.4
133,958 - -0.6
133,959 + -0.5
133,961 - -0.9
133,961 - -0.6
133,961 - -2.5
133,962 + -2.2
133,982 - +1.1
133,983 + +0.5
133,983 + -1.7
134,015 - +0.1
134,038 + -1.3
134,130 + MMJJ_RS00685 0.11 -0.7
134,218 - MMJJ_RS00685 0.17 -0.2
134,219 + MMJJ_RS00685 0.17 -0.9
134,219 + MMJJ_RS00685 0.17 -0.8
134,219 + MMJJ_RS00685 0.17 -1.0
134,228 + MMJJ_RS00685 0.18 -0.5
134,228 + MMJJ_RS00685 0.18 -2.5
134,319 - MMJJ_RS00685 0.24 +0.1
134,319 - MMJJ_RS00685 0.24 -1.3
134,319 - MMJJ_RS00685 0.24 -0.3
134,320 + MMJJ_RS00685 0.24 -1.8
134,323 - MMJJ_RS00685 0.25 +0.4
134,323 - MMJJ_RS00685 0.25 -1.8
134,324 + MMJJ_RS00685 0.25 -1.0
134,324 + MMJJ_RS00685 0.25 -3.0
134,324 + MMJJ_RS00685 0.25 +0.3
134,372 + MMJJ_RS00685 0.28 +0.4
134,378 + MMJJ_RS00685 0.29 +0.2
134,378 + MMJJ_RS00685 0.29 -1.8
134,393 - MMJJ_RS00685 0.30 -2.9
134,393 - MMJJ_RS00685 0.30 +0.3
134,417 + MMJJ_RS00685 0.31 +0.2
134,420 - MMJJ_RS00685 0.32 -1.9
134,420 - MMJJ_RS00685 0.32 -2.5
134,421 + MMJJ_RS00685 0.32 -1.9
134,421 + MMJJ_RS00685 0.32 -0.3
134,473 - MMJJ_RS00685 0.35 -0.1
134,474 + MMJJ_RS00685 0.35 -0.4
134,474 + MMJJ_RS00685 0.35 +0.2
134,533 + MMJJ_RS00685 0.40 +0.1
134,580 + MMJJ_RS00685 0.43 -1.1
134,615 - MMJJ_RS00685 0.46 -1.7
134,616 + MMJJ_RS00685 0.46 +0.6
134,619 - MMJJ_RS00685 0.46 +0.4
134,634 - MMJJ_RS00685 0.47 -1.3
134,634 - MMJJ_RS00685 0.47 -1.2
134,635 + MMJJ_RS00685 0.47 +0.3
134,704 + MMJJ_RS00685 0.52 -0.1
134,749 + MMJJ_RS00685 0.55 -1.8
134,754 - MMJJ_RS00685 0.56 -1.8
134,755 + MMJJ_RS00685 0.56 +0.0
134,755 + MMJJ_RS00685 0.56 +0.0
134,758 - MMJJ_RS00685 0.56 +1.2
134,759 + MMJJ_RS00685 0.56 +0.9
134,764 + MMJJ_RS00685 0.56 -0.1
134,790 - MMJJ_RS00685 0.58 -0.9
134,790 - MMJJ_RS00685 0.58 -0.6
134,791 + MMJJ_RS00685 0.58 +0.1
134,791 + MMJJ_RS00685 0.58 -1.5
134,791 + MMJJ_RS00685 0.58 -1.0
134,821 - MMJJ_RS00685 0.60 -0.4
134,839 + MMJJ_RS00685 0.62 -0.4
134,839 + MMJJ_RS00685 0.62 +0.4
134,843 + MMJJ_RS00685 0.62 -3.0
134,875 - MMJJ_RS00685 0.64 +0.2
134,880 - MMJJ_RS00685 0.65 -0.8
134,881 + MMJJ_RS00685 0.65 -2.4
134,884 - MMJJ_RS00685 0.65 +1.0
134,885 + MMJJ_RS00685 0.65 -0.8
134,896 - MMJJ_RS00685 0.66 -1.0
134,905 + MMJJ_RS00685 0.67 -0.2
134,909 - MMJJ_RS00685 0.67 +0.6
134,943 - MMJJ_RS00685 0.69 -1.2
134,944 + MMJJ_RS00685 0.69 -0.4
134,946 - MMJJ_RS00685 0.69 +0.6
134,947 + MMJJ_RS00685 0.70 -1.0

Or see this region's nucleotide sequence