Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_4186

Experiment: Chlorite 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_4184 and Ga0059261_4185 overlap by 13 nucleotidesGa0059261_4185 and Ga0059261_4186 are separated by 41 nucleotidesGa0059261_4186 and Ga0059261_4187 are separated by 121 nucleotides Ga0059261_4184: Ga0059261_4184 - exosortase A system-associated hydrolase 1, at 4,335,212 to 4,336,024 _4184 Ga0059261_4185: Ga0059261_4185 - hypothetical protein, at 4,336,012 to 4,336,668 _4185 Ga0059261_4186: Ga0059261_4186 - Phosphopantetheine attachment site, at 4,336,710 to 4,336,982 _4186 Ga0059261_4187: Ga0059261_4187 - acyl-CoA ligase (AMP-forming), exosortase A-associated, at 4,337,104 to 4,338,615 _4187 Position (kb) 4336 4337Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 4336.036 kb on + strandat 4336.036 kb on + strandat 4336.036 kb on + strandat 4336.036 kb on + strandat 4336.037 kb on - strandat 4336.037 kb on - strandat 4336.365 kb on - strand, within Ga0059261_4185at 4336.407 kb on + strand, within Ga0059261_4185at 4336.694 kb on + strandat 4336.694 kb on + strandat 4336.694 kb on + strandat 4336.694 kb on + strandat 4336.694 kb on + strandat 4336.695 kb on - strandat 4336.695 kb on - strandat 4336.695 kb on - strandat 4336.740 kb on + strand, within Ga0059261_4186at 4336.935 kb on + strand, within Ga0059261_4186at 4336.935 kb on + strandat 4336.936 kb on - strand, within Ga0059261_4186at 4336.998 kb on + strandat 4336.999 kb on - strandat 4337.053 kb on + strandat 4337.054 kb on - strandat 4337.072 kb on + strandat 4337.073 kb on - strandat 4337.073 kb on - strandat 4337.092 kb on + strandat 4337.093 kb on - strandat 4337.203 kb on + strandat 4337.203 kb on + strandat 4337.394 kb on + strand, within Ga0059261_4187at 4337.569 kb on + strand, within Ga0059261_4187at 4337.569 kb on + strand, within Ga0059261_4187at 4337.569 kb on + strand, within Ga0059261_4187at 4337.569 kb on + strand, within Ga0059261_4187at 4337.569 kb on + strand, within Ga0059261_4187at 4337.569 kb on + strand, within Ga0059261_4187at 4337.569 kb on + strandat 4337.569 kb on + strand, within Ga0059261_4187at 4337.569 kb on + strand, within Ga0059261_4187at 4337.570 kb on - strand, within Ga0059261_4187at 4337.570 kb on - strand, within Ga0059261_4187at 4337.570 kb on - strand, within Ga0059261_4187at 4337.622 kb on + strand, within Ga0059261_4187at 4337.622 kb on + strand, within Ga0059261_4187at 4337.622 kb on + strand, within Ga0059261_4187at 4337.622 kb on + strand, within Ga0059261_4187at 4337.622 kb on + strand, within Ga0059261_4187at 4337.622 kb on + strand, within Ga0059261_4187at 4337.623 kb on - strand, within Ga0059261_4187at 4337.623 kb on - strand, within Ga0059261_4187at 4337.623 kb on - strand, within Ga0059261_4187at 4337.623 kb on - strand, within Ga0059261_4187at 4337.623 kb on - strand, within Ga0059261_4187at 4337.623 kb on - strand, within Ga0059261_4187at 4337.623 kb on - strand, within Ga0059261_4187at 4337.623 kb on - strand, within Ga0059261_4187at 4337.623 kb on - strand, within Ga0059261_4187at 4337.653 kb on + strand, within Ga0059261_4187at 4337.654 kb on - strand, within Ga0059261_4187at 4337.654 kb on - strand, within Ga0059261_4187at 4337.690 kb on + strand, within Ga0059261_4187at 4337.690 kb on + strand, within Ga0059261_4187at 4337.691 kb on - strand, within Ga0059261_4187at 4337.710 kb on + strand, within Ga0059261_4187at 4337.711 kb on - strand, within Ga0059261_4187at 4337.711 kb on - strandat 4337.770 kb on + strand, within Ga0059261_4187at 4337.770 kb on + strand, within Ga0059261_4187at 4337.771 kb on - strand, within Ga0059261_4187at 4337.817 kb on + strand, within Ga0059261_4187at 4337.895 kb on + strand, within Ga0059261_4187at 4337.925 kb on + strand, within Ga0059261_4187at 4337.925 kb on + strand, within Ga0059261_4187at 4337.930 kb on + strand, within Ga0059261_4187at 4337.930 kb on + strand, within Ga0059261_4187at 4337.930 kb on + strand, within Ga0059261_4187at 4337.930 kb on + strand, within Ga0059261_4187at 4337.930 kb on + strand, within Ga0059261_4187at 4337.930 kb on + strand, within Ga0059261_4187at 4337.930 kb on + strand, within Ga0059261_4187at 4337.930 kb on + strand, within Ga0059261_4187at 4337.931 kb on - strand, within Ga0059261_4187at 4337.931 kb on - strand, within Ga0059261_4187at 4337.931 kb on - strand, within Ga0059261_4187at 4337.931 kb on - strand, within Ga0059261_4187at 4337.977 kb on + strand, within Ga0059261_4187

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 0.5 mM
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4,336,036 + +0.7
4,336,036 + -1.4
4,336,036 + +0.0
4,336,036 + +0.3
4,336,037 - +0.3
4,336,037 - +0.4
4,336,365 - Ga0059261_4185 0.54 -0.2
4,336,407 + Ga0059261_4185 0.60 -1.1
4,336,694 + +0.4
4,336,694 + +0.5
4,336,694 + +0.4
4,336,694 + +1.1
4,336,694 + -0.4
4,336,695 - -0.6
4,336,695 - +0.1
4,336,695 - -0.3
4,336,740 + Ga0059261_4186 0.11 -0.6
4,336,935 + Ga0059261_4186 0.82 -1.8
4,336,935 + -1.0
4,336,936 - Ga0059261_4186 0.83 -3.5
4,336,998 + -1.5
4,336,999 - -0.9
4,337,053 + -0.1
4,337,054 - -0.3
4,337,072 + -1.6
4,337,073 - +1.8
4,337,073 - -1.5
4,337,092 + +0.8
4,337,093 - -1.2
4,337,203 + -1.9
4,337,203 + -3.0
4,337,394 + Ga0059261_4187 0.19 -1.0
4,337,569 + Ga0059261_4187 0.31 -1.4
4,337,569 + Ga0059261_4187 0.31 -1.9
4,337,569 + Ga0059261_4187 0.31 -0.7
4,337,569 + Ga0059261_4187 0.31 -2.3
4,337,569 + Ga0059261_4187 0.31 -1.9
4,337,569 + Ga0059261_4187 0.31 -1.1
4,337,569 + +1.0
4,337,569 + Ga0059261_4187 0.31 -0.6
4,337,569 + Ga0059261_4187 0.31 -1.8
4,337,570 - Ga0059261_4187 0.31 -3.6
4,337,570 - Ga0059261_4187 0.31 +1.0
4,337,570 - Ga0059261_4187 0.31 -2.7
4,337,622 + Ga0059261_4187 0.34 -2.7
4,337,622 + Ga0059261_4187 0.34 -2.4
4,337,622 + Ga0059261_4187 0.34 -2.0
4,337,622 + Ga0059261_4187 0.34 -3.7
4,337,622 + Ga0059261_4187 0.34 -3.1
4,337,622 + Ga0059261_4187 0.34 -2.0
4,337,623 - Ga0059261_4187 0.34 -2.4
4,337,623 - Ga0059261_4187 0.34 -2.4
4,337,623 - Ga0059261_4187 0.34 -0.9
4,337,623 - Ga0059261_4187 0.34 -3.0
4,337,623 - Ga0059261_4187 0.34 -1.8
4,337,623 - Ga0059261_4187 0.34 +0.0
4,337,623 - Ga0059261_4187 0.34 -3.0
4,337,623 - Ga0059261_4187 0.34 -3.0
4,337,623 - Ga0059261_4187 0.34 -1.6
4,337,653 + Ga0059261_4187 0.36 -4.1
4,337,654 - Ga0059261_4187 0.36 -1.4
4,337,654 - Ga0059261_4187 0.36 -1.0
4,337,690 + Ga0059261_4187 0.39 -1.6
4,337,690 + Ga0059261_4187 0.39 -1.8
4,337,691 - Ga0059261_4187 0.39 -2.4
4,337,710 + Ga0059261_4187 0.40 +0.6
4,337,711 - Ga0059261_4187 0.40 -2.6
4,337,711 - +0.0
4,337,770 + Ga0059261_4187 0.44 -1.8
4,337,770 + Ga0059261_4187 0.44 -2.7
4,337,771 - Ga0059261_4187 0.44 -2.0
4,337,817 + Ga0059261_4187 0.47 -2.2
4,337,895 + Ga0059261_4187 0.52 -1.3
4,337,925 + Ga0059261_4187 0.54 -2.2
4,337,925 + Ga0059261_4187 0.54 -2.2
4,337,930 + Ga0059261_4187 0.55 +0.0
4,337,930 + Ga0059261_4187 0.55 -0.8
4,337,930 + Ga0059261_4187 0.55 -2.6
4,337,930 + Ga0059261_4187 0.55 -1.0
4,337,930 + Ga0059261_4187 0.55 -1.6
4,337,930 + Ga0059261_4187 0.55 -0.4
4,337,930 + Ga0059261_4187 0.55 -3.0
4,337,930 + Ga0059261_4187 0.55 -1.3
4,337,931 - Ga0059261_4187 0.55 -2.8
4,337,931 - Ga0059261_4187 0.55 -1.8
4,337,931 - Ga0059261_4187 0.55 -2.4
4,337,931 - Ga0059261_4187 0.55 -2.7
4,337,977 + Ga0059261_4187 0.58 -2.7

Or see this region's nucleotide sequence