Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02359

Experiment: PYE with nitrite 2.5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 2.5 mM
2,497,669	-		CCNA_02357	0.78	+1.3
2,497,683	-		CCNA_02357	0.79	+0.1
2,497,683	-		CCNA_02357	0.79	-0.1
2,497,683	-		CCNA_02357	0.79	+1.7
2,497,720	+		CCNA_02357	0.81	-0.8
2,497,767	-		CCNA_02357	0.85	+0.3
2,497,782	+		CCNA_02357	0.86	-1.1
2,497,790	+		CCNA_02357	0.86	-1.7
2,497,817	+		CCNA_02357	0.88	+1.7
2,497,817	+		CCNA_02357	0.88	+1.7
2,497,817	+		CCNA_02357	0.88	-0.7
2,497,817	+		CCNA_02357	0.88	-1.8
2,497,825	-		CCNA_02357	0.89	+0.5
2,497,858	-				+0.5
2,497,898	+				-2.1
2,497,898	+				-2.4
2,497,898	+				-0.7
2,497,906	-				-0.1
2,497,906	-				-0.7
2,497,906	-				+4.5
2,497,958	-				+0.7
2,497,961	+				-1.3
2,497,963	-				+0.9
2,497,968	-				-1.0
2,497,996	-				+0.3
2,497,996	-				+1.0
2,498,005	+				-1.3
2,498,005	+				-1.8
2,498,005	+				-0.9
2,498,013	-				+0.4
2,498,013	-				-0.7
2,498,026	+				+0.7
2,498,047	-				+0.3
2,498,087	-				-0.1
2,498,087	-				+0.3
2,498,094	+				-1.4
2,498,102	-				-0.7
2,498,166	+		CCNA_02358	0.18	-1.7
2,498,166	+		CCNA_02358	0.18	-1.1
2,498,173	+		CCNA_02358	0.19	+0.4
2,498,177	+		CCNA_02358	0.20	+0.7
2,498,203	-		CCNA_02358	0.25	+0.3
2,498,229	+		CCNA_02358	0.30	-0.2
2,498,327	-		CCNA_02358	0.49	-0.8
2,498,332	-		CCNA_02358	0.50	+0.5
2,498,357	+		CCNA_02358	0.54	-0.9
2,498,357	+		CCNA_02358	0.54	-2.9
2,498,365	-		CCNA_02358	0.56	-0.1
2,498,398	+		CCNA_02358	0.62	-1.1
2,498,403	+		CCNA_02358	0.63	-1.3
2,498,403	+		CCNA_02358	0.63	-1.3
2,498,406	-		CCNA_02358	0.64	-1.6
2,498,408	+		CCNA_02358	0.64	-2.7
2,498,411	-		CCNA_02358	0.65	+0.0
2,498,478	+		CCNA_02358	0.77	+0.7
2,498,486	-		CCNA_02358	0.79	-1.0
2,498,488	+		CCNA_02358	0.79	-0.8
2,498,488	+		CCNA_02358	0.79	-0.3
2,498,502	+		CCNA_02358	0.82	-0.8
2,498,542	-		CCNA_02358	0.90	-0.7
2,498,566	+				-0.5
2,498,566	+				+0.4
2,498,572	+				-1.3
2,498,618	-				+0.8
2,498,627	+				-0.3
2,498,627	+				-0.3
2,498,633	+				-0.3
2,498,633	+				+0.1
2,498,634	+				-0.7
2,498,634	+				-0.3
2,498,635	-				-1.2
2,498,641	-				-0.1
2,498,683	+				-0.5
2,498,683	+				-1.6
2,498,691	-				-0.4
2,498,691	-				-0.0
2,498,691	-				-1.1
2,498,691	-				-0.1
2,498,691	-				+0.3
2,498,691	-				-0.1
2,498,740	-		CCNA_02359	0.10	-0.7
2,498,776	+		CCNA_02359	0.14	-0.5
2,498,827	-		CCNA_02359	0.18	+0.7
2,498,827	-		CCNA_02359	0.18	+1.0
2,498,848	-		CCNA_02359	0.20	+0.9
2,498,852	-		CCNA_02359	0.21	+0.3
2,498,855	+		CCNA_02359	0.21	-0.0
2,498,855	+		CCNA_02359	0.21	-1.5
2,498,863	-		CCNA_02359	0.22	-0.3
2,498,863	-		CCNA_02359	0.22	-0.3
2,498,985	+		CCNA_02359	0.34	+0.7
2,498,993	-		CCNA_02359	0.34	-1.7
2,499,032	-		CCNA_02359	0.38	-0.3
2,499,039	+		CCNA_02359	0.39	-0.9
2,499,047	-		CCNA_02359	0.40	-0.2
2,499,064	+		CCNA_02359	0.41	+2.7
2,499,087	+		CCNA_02359	0.44	-2.6
2,499,089	-		CCNA_02359	0.44	-0.6
2,499,208	+		CCNA_02359	0.55	-0.7
2,499,208	+		CCNA_02359	0.55	-1.1
2,499,208	+		CCNA_02359	0.55	-0.2
2,499,208	+		CCNA_02359	0.55	-0.4
2,499,208	+		CCNA_02359	0.55	-2.0
2,499,215	+		CCNA_02359	0.56	-1.1
2,499,216	-		CCNA_02359	0.56	-0.3
2,499,216	-		CCNA_02359	0.56	-1.8
2,499,216	-		CCNA_02359	0.56	-2.5
2,499,216	-		CCNA_02359	0.56	-1.0
2,499,216	-		CCNA_02359	0.56	-2.1
2,499,216	-		CCNA_02359	0.56	-1.5
2,499,216	-		CCNA_02359	0.56	+0.1
2,499,216	-		CCNA_02359	0.56	-0.3
2,499,248	+		CCNA_02359	0.59	+0.4
2,499,248	+		CCNA_02359	0.59	-1.5
2,499,248	+		CCNA_02359	0.59	-1.8
2,499,279	-		CCNA_02359	0.62	+1.7
2,499,300	-		CCNA_02359	0.64	-1.4
2,499,300	-		CCNA_02359	0.64	-0.4
2,499,300	-		CCNA_02359	0.64	-0.1
2,499,312	+		CCNA_02359	0.65	-1.3
2,499,331	+		CCNA_02359	0.67	-0.7
2,499,347	-		CCNA_02359	0.69	+0.3
2,499,383	-		CCNA_02359	0.72	-0.0
2,499,383	-		CCNA_02359	0.72	+0.1
2,499,383	-		CCNA_02359	0.72	-0.2
2,499,452	-		CCNA_02359	0.79	-0.0
2,499,454	-		CCNA_02359	0.79	-1.6
2,499,476	+		CCNA_02359	0.81	-3.1
2,499,484	-		CCNA_02359	0.82	-0.4
2,499,520	+		CCNA_02359	0.85	+1.7
2,499,527	-		CCNA_02359	0.86	+0.1
2,499,527	-		CCNA_02359	0.86	+0.1
2,499,605	+				-1.5
2,499,605	+				-0.7
2,499,605	+				-0.1
2,499,613	-				+0.7
2,499,613	-				-0.4
2,499,617	-				+0.8
2,499,671	-		CCNA_02360	0.12	-1.5
2,499,673	-		CCNA_02360	0.13	+0.1
2,499,673	-		CCNA_02360	0.13	+0.1
2,499,688	+		CCNA_02360	0.14	+0.1
2,499,688	+		CCNA_02360	0.14	-0.9
2,499,700	+		CCNA_02360	0.16	-0.8
2,499,705	+		CCNA_02360	0.16	+0.7
2,499,705	+		CCNA_02360	0.16	+0.3
2,499,781	-		CCNA_02360	0.24	+1.7
2,499,820	-		CCNA_02360	0.29	+0.2
2,499,821	+		CCNA_02360	0.29	+0.7
2,499,821	+		CCNA_02360	0.29	-1.9
2,499,837	+		CCNA_02360	0.31	-1.0
2,499,837	+		CCNA_02360	0.31	-1.8
2,499,846	-		CCNA_02360	0.31	-0.8
2,499,848	+		CCNA_02360	0.32	-1.1
2,499,848	+		CCNA_02360	0.32	+0.1
2,499,848	+		CCNA_02360	0.32	-1.3
2,499,848	+		CCNA_02360	0.32	-0.8
2,499,851	-		CCNA_02360	0.32	+0.0
2,499,856	-		CCNA_02360	0.33	+0.3
2,499,973	-		CCNA_02360	0.45	+1.9
2,499,983	-		CCNA_02360	0.46	+0.4
2,499,987	+		CCNA_02360	0.47	-1.3
2,499,990	-		CCNA_02360	0.47	+0.2
2,500,006	+		CCNA_02360	0.49	+0.7
2,500,006	+		CCNA_02360	0.49	+0.7
2,500,014	-		CCNA_02360	0.50	-1.3
2,500,014	-		CCNA_02360	0.50	-3.2
2,500,030	+		CCNA_02360	0.51	-1.3
2,500,030	+		CCNA_02360	0.51	-1.6
2,500,038	-		CCNA_02360	0.52	+0.7
2,500,038	-		CCNA_02360	0.52	-0.4
2,500,038	-		CCNA_02360	0.52	-1.8
2,500,043	-		CCNA_02360	0.53	-1.7
2,500,086	-		CCNA_02360	0.58	+0.3
2,500,087	+		CCNA_02360	0.58	+0.2
2,500,088	+		CCNA_02360	0.58	-1.0
2,500,105	+		CCNA_02360	0.60	-2.4
2,500,113	-		CCNA_02360	0.60	-0.3
2,500,114	-		CCNA_02360	0.61	+1.7
2,500,114	-		CCNA_02360	0.61	+0.6
2,500,120	+		CCNA_02360	0.61	-0.9
2,500,175	+		CCNA_02360	0.67	+0.1
2,500,183	-		CCNA_02360	0.68	+0.2
2,500,183	-		CCNA_02360	0.68	-0.7
2,500,207	+		CCNA_02360	0.71	-1.3
2,500,218	+		CCNA_02360	0.72	-1.1
2,500,218	+		CCNA_02360	0.72	-0.0
2,500,225	+		CCNA_02360	0.73	-0.6
2,500,235	+		CCNA_02360	0.74	-0.6
2,500,312	-		CCNA_02360	0.82	+0.7
2,500,350	-		CCNA_02360	0.86	+1.0
2,500,376	-		CCNA_02360	0.89	-0.3
2,500,382	-		CCNA_02360	0.90	+1.4
2,500,392	-				+1.1
2,500,398	+				-1.9
2,500,461	-				+0.2
2,500,468	-				+1.1
2,500,480	+				+1.7
2,500,491	-				+1.9
2,500,501	-				+4.4
2,500,526	-				+0.2
2,500,537	-				+0.8
2,500,547	+				+0.1
2,500,567	+				+0.7
2,500,569	+				+1.7
2,500,570	-				+0.7
2,500,575	-				+0.8
2,500,618	-		CCNA_02361	0.12	-1.4