Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01942

Experiment: PYE with nitrite 2.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_01941 and CCNA_01942 overlap by 4 nucleotidesCCNA_01942 and CCNA_01943 are separated by 178 nucleotidesCCNA_01943 and CCNA_01944 are separated by 66 nucleotides CCNA_01941: CCNA_01941 - cysteine desulfhydrase/Selenocysteine lyase, at 2,083,785 to 2,084,924 _01941 CCNA_01942: CCNA_01942 - Rrf2 family protein, at 2,084,921 to 2,085,397 _01942 CCNA_01943: CCNA_01943 - alpha/beta hydrolase family protein, at 2,085,576 to 2,086,226 _01943 CCNA_01944: CCNA_01944 - McrA-family restriction endonuclease, at 2,086,293 to 2,086,811 _01944 Position (kb) 2084 2085 2086Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2084.925 kb on - strandat 2084.994 kb on - strand, within CCNA_01942at 2084.997 kb on + strand, within CCNA_01942at 2085.057 kb on + strand, within CCNA_01942at 2085.072 kb on + strand, within CCNA_01942at 2085.080 kb on - strand, within CCNA_01942at 2085.092 kb on + strand, within CCNA_01942at 2085.100 kb on - strand, within CCNA_01942at 2085.101 kb on - strand, within CCNA_01942at 2085.101 kb on - strand, within CCNA_01942at 2085.101 kb on - strand, within CCNA_01942at 2085.101 kb on - strand, within CCNA_01942at 2085.167 kb on + strand, within CCNA_01942at 2085.175 kb on - strand, within CCNA_01942at 2085.182 kb on - strand, within CCNA_01942at 2085.232 kb on - strand, within CCNA_01942at 2085.273 kb on + strand, within CCNA_01942at 2085.335 kb on - strand, within CCNA_01942at 2085.339 kb on + strand, within CCNA_01942at 2085.400 kb on + strandat 2085.400 kb on + strandat 2085.400 kb on + strandat 2085.400 kb on + strandat 2085.400 kb on + strandat 2085.400 kb on + strandat 2085.400 kb on + strandat 2085.400 kb on + strandat 2085.400 kb on + strandat 2085.400 kb on + strandat 2085.407 kb on - strandat 2085.408 kb on - strandat 2085.408 kb on - strandat 2085.408 kb on - strandat 2085.408 kb on - strandat 2085.408 kb on - strandat 2085.408 kb on - strandat 2085.408 kb on - strandat 2085.408 kb on - strandat 2085.408 kb on - strandat 2085.408 kb on - strandat 2085.408 kb on - strandat 2085.408 kb on - strandat 2085.408 kb on - strandat 2085.408 kb on - strandat 2085.408 kb on - strandat 2085.451 kb on - strandat 2086.025 kb on + strand, within CCNA_01943at 2086.234 kb on + strandat 2086.242 kb on - strandat 2086.244 kb on + strandat 2086.244 kb on + strandat 2086.244 kb on + strandat 2086.252 kb on - strandat 2086.256 kb on + strandat 2086.291 kb on + strandat 2086.299 kb on - strandat 2086.299 kb on - strandat 2086.346 kb on - strand, within CCNA_01944at 2086.361 kb on - strand, within CCNA_01944

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with nitrite 2.5 mM
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2,084,925 - +1.6
2,084,994 - CCNA_01942 0.15 +2.1
2,084,997 + CCNA_01942 0.16 +0.8
2,085,057 + CCNA_01942 0.29 -1.6
2,085,072 + CCNA_01942 0.32 +3.4
2,085,080 - CCNA_01942 0.33 +2.5
2,085,092 + CCNA_01942 0.36 +0.8
2,085,100 - CCNA_01942 0.38 +1.8
2,085,101 - CCNA_01942 0.38 +2.0
2,085,101 - CCNA_01942 0.38 +2.0
2,085,101 - CCNA_01942 0.38 +2.1
2,085,101 - CCNA_01942 0.38 +1.9
2,085,167 + CCNA_01942 0.52 -0.5
2,085,175 - CCNA_01942 0.53 +1.9
2,085,182 - CCNA_01942 0.55 +1.9
2,085,232 - CCNA_01942 0.65 +2.2
2,085,273 + CCNA_01942 0.74 -1.0
2,085,335 - CCNA_01942 0.87 +1.5
2,085,339 + CCNA_01942 0.88 +0.8
2,085,400 + -0.5
2,085,400 + +0.2
2,085,400 + -2.1
2,085,400 + +0.2
2,085,400 + -0.5
2,085,400 + +0.6
2,085,400 + -1.3
2,085,400 + -1.1
2,085,400 + -1.0
2,085,400 + -0.0
2,085,407 - +1.2
2,085,408 - -0.4
2,085,408 - +0.2
2,085,408 - +0.2
2,085,408 - -0.5
2,085,408 - -0.8
2,085,408 - -1.3
2,085,408 - -0.0
2,085,408 - -0.0
2,085,408 - +1.6
2,085,408 - +1.8
2,085,408 - +1.8
2,085,408 - +0.7
2,085,408 - -0.0
2,085,408 - +2.4
2,085,408 - +0.1
2,085,451 - +0.3
2,086,025 + CCNA_01943 0.69 +1.8
2,086,234 + +1.6
2,086,242 - +0.8
2,086,244 + +2.4
2,086,244 + +1.2
2,086,244 + +2.2
2,086,252 - -0.2
2,086,256 + +0.0
2,086,291 + -1.0
2,086,299 - +0.6
2,086,299 - -0.2
2,086,346 - CCNA_01944 0.10 +0.8
2,086,361 - CCNA_01944 0.13 -0.9

Or see this region's nucleotide sequence