Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00299

Experiment: PYE with nitrite 2.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00297 and CCNA_00298 overlap by 4 nucleotidesCCNA_00298 and CCNA_00299 are separated by 11 nucleotidesCCNA_00299 and CCNA_00300 are separated by 16 nucleotidesCCNA_00300 and CCNA_00301 are separated by 229 nucleotides CCNA_00297: CCNA_00297 - two-component response regulator, at 311,039 to 311,896 _00297 CCNA_00298: CCNA_00298 - hypothetical protein, at 311,893 to 312,666 _00298 CCNA_00299: CCNA_00299 - phosphoribosylamine--glycine ligase, at 312,678 to 313,961 _00299 CCNA_00300: CCNA_00300 - glyoxalase superfamily protein, at 313,978 to 314,385 _00300 CCNA_00301: CCNA_00301 - phosphotransferase family protein, at 314,615 to 315,697 _00301 Position (kb) 312 313 314Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 311.690 kb on - strand, within CCNA_00297at 311.690 kb on - strand, within CCNA_00297at 311.690 kb on - strand, within CCNA_00297at 311.706 kb on - strand, within CCNA_00297at 311.741 kb on + strand, within CCNA_00297at 311.741 kb on + strand, within CCNA_00297at 311.751 kb on + strand, within CCNA_00297at 311.754 kb on - strand, within CCNA_00297at 311.765 kb on - strand, within CCNA_00297at 311.772 kb on + strand, within CCNA_00297at 311.775 kb on - strand, within CCNA_00297at 311.846 kb on + strandat 311.846 kb on + strandat 311.846 kb on + strandat 311.846 kb on + strandat 311.854 kb on - strandat 311.889 kb on + strandat 311.897 kb on - strandat 311.897 kb on - strandat 311.900 kb on + strandat 311.936 kb on + strandat 311.954 kb on + strandat 311.954 kb on + strandat 311.962 kb on + strandat 311.962 kb on + strandat 311.962 kb on - strandat 311.967 kb on + strandat 311.980 kb on - strand, within CCNA_00298at 312.004 kb on + strand, within CCNA_00298at 312.033 kb on + strand, within CCNA_00298at 312.041 kb on - strand, within CCNA_00298at 312.077 kb on + strand, within CCNA_00298at 312.077 kb on + strand, within CCNA_00298at 312.085 kb on - strand, within CCNA_00298at 312.085 kb on - strand, within CCNA_00298at 312.085 kb on - strand, within CCNA_00298at 312.104 kb on + strand, within CCNA_00298at 312.111 kb on + strand, within CCNA_00298at 312.123 kb on + strand, within CCNA_00298at 312.137 kb on - strand, within CCNA_00298at 312.147 kb on - strand, within CCNA_00298at 312.155 kb on + strand, within CCNA_00298at 312.155 kb on + strand, within CCNA_00298at 312.155 kb on + strand, within CCNA_00298at 312.155 kb on + strand, within CCNA_00298at 312.163 kb on - strand, within CCNA_00298at 312.163 kb on - strand, within CCNA_00298at 312.163 kb on - strand, within CCNA_00298at 312.163 kb on - strand, within CCNA_00298at 312.168 kb on - strand, within CCNA_00298at 312.178 kb on - strand, within CCNA_00298at 312.180 kb on + strand, within CCNA_00298at 312.180 kb on + strandat 312.180 kb on + strand, within CCNA_00298at 312.187 kb on - strand, within CCNA_00298at 312.188 kb on - strand, within CCNA_00298at 312.188 kb on - strand, within CCNA_00298at 312.188 kb on - strand, within CCNA_00298at 312.188 kb on - strand, within CCNA_00298at 312.200 kb on - strand, within CCNA_00298at 312.215 kb on + strand, within CCNA_00298at 312.215 kb on - strand, within CCNA_00298at 312.222 kb on - strand, within CCNA_00298at 312.223 kb on - strand, within CCNA_00298at 312.259 kb on - strand, within CCNA_00298at 312.262 kb on + strand, within CCNA_00298at 312.303 kb on + strand, within CCNA_00298at 312.318 kb on - strand, within CCNA_00298at 312.319 kb on + strand, within CCNA_00298at 312.327 kb on - strand, within CCNA_00298at 312.350 kb on + strand, within CCNA_00298at 312.358 kb on - strand, within CCNA_00298at 312.387 kb on + strand, within CCNA_00298at 312.397 kb on + strand, within CCNA_00298at 312.405 kb on - strand, within CCNA_00298at 312.414 kb on + strand, within CCNA_00298at 312.415 kb on + strand, within CCNA_00298at 312.422 kb on - strand, within CCNA_00298at 312.423 kb on - strand, within CCNA_00298at 312.432 kb on + strand, within CCNA_00298at 312.434 kb on + strand, within CCNA_00298at 312.457 kb on + strandat 312.484 kb on - strand, within CCNA_00298at 312.510 kb on + strand, within CCNA_00298at 312.518 kb on - strand, within CCNA_00298at 312.529 kb on - strand, within CCNA_00298at 312.542 kb on - strand, within CCNA_00298at 312.542 kb on - strand, within CCNA_00298at 312.545 kb on + strand, within CCNA_00298at 312.553 kb on - strand, within CCNA_00298at 312.555 kb on - strand, within CCNA_00298at 312.568 kb on - strand, within CCNA_00298at 312.616 kb on - strandat 312.616 kb on - strandat 312.636 kb on - strandat 312.646 kb on - strandat 312.752 kb on - strandat 312.866 kb on - strand, within CCNA_00299at 312.892 kb on + strand, within CCNA_00299at 312.900 kb on - strand, within CCNA_00299at 312.952 kb on + strand, within CCNA_00299at 312.988 kb on + strand, within CCNA_00299at 312.996 kb on - strand, within CCNA_00299at 313.080 kb on + strand, within CCNA_00299at 313.090 kb on + strand, within CCNA_00299at 313.117 kb on - strand, within CCNA_00299at 313.141 kb on - strand, within CCNA_00299at 313.165 kb on + strand, within CCNA_00299at 313.188 kb on + strand, within CCNA_00299at 313.234 kb on - strand, within CCNA_00299at 313.250 kb on - strand, within CCNA_00299at 313.309 kb on - strand, within CCNA_00299at 313.311 kb on + strandat 313.319 kb on - strand, within CCNA_00299at 313.319 kb on - strand, within CCNA_00299at 313.410 kb on + strand, within CCNA_00299at 313.415 kb on + strand, within CCNA_00299at 313.423 kb on - strand, within CCNA_00299at 313.423 kb on - strand, within CCNA_00299at 313.423 kb on - strand, within CCNA_00299at 313.423 kb on - strand, within CCNA_00299at 313.484 kb on + strand, within CCNA_00299at 313.492 kb on - strand, within CCNA_00299at 313.523 kb on - strand, within CCNA_00299at 313.532 kb on + strand, within CCNA_00299at 313.551 kb on - strand, within CCNA_00299at 313.567 kb on + strand, within CCNA_00299at 313.569 kb on - strand, within CCNA_00299at 313.575 kb on - strand, within CCNA_00299at 313.596 kb on + strand, within CCNA_00299at 313.631 kb on + strand, within CCNA_00299at 313.680 kb on + strand, within CCNA_00299at 313.694 kb on + strand, within CCNA_00299at 313.800 kb on - strand, within CCNA_00299at 313.857 kb on - strandat 314.001 kb on + strandat 314.025 kb on + strand, within CCNA_00300at 314.029 kb on - strand, within CCNA_00300at 314.033 kb on - strand, within CCNA_00300at 314.033 kb on - strand, within CCNA_00300at 314.040 kb on - strand, within CCNA_00300at 314.064 kb on - strand, within CCNA_00300at 314.127 kb on + strand, within CCNA_00300at 314.135 kb on - strand, within CCNA_00300at 314.153 kb on + strand, within CCNA_00300at 314.153 kb on + strand, within CCNA_00300at 314.153 kb on + strand, within CCNA_00300at 314.153 kb on + strand, within CCNA_00300at 314.153 kb on + strand, within CCNA_00300at 314.155 kb on - strand, within CCNA_00300at 314.161 kb on - strand, within CCNA_00300at 314.161 kb on - strand, within CCNA_00300at 314.166 kb on - strand, within CCNA_00300at 314.166 kb on - strand, within CCNA_00300at 314.166 kb on - strand, within CCNA_00300at 314.166 kb on - strand, within CCNA_00300at 314.166 kb on - strand, within CCNA_00300at 314.186 kb on - strand, within CCNA_00300at 314.204 kb on - strand, within CCNA_00300at 314.205 kb on - strand, within CCNA_00300at 314.210 kb on - strand, within CCNA_00300at 314.238 kb on + strand, within CCNA_00300at 314.238 kb on + strand, within CCNA_00300at 314.246 kb on - strand, within CCNA_00300at 314.246 kb on - strand, within CCNA_00300at 314.247 kb on - strand, within CCNA_00300at 314.256 kb on - strand, within CCNA_00300at 314.332 kb on - strand, within CCNA_00300at 314.339 kb on + strand, within CCNA_00300at 314.380 kb on - strandat 314.392 kb on + strandat 314.392 kb on - strandat 314.399 kb on - strandat 314.400 kb on - strandat 314.445 kb on + strandat 314.471 kb on - strandat 314.503 kb on - strandat 314.551 kb on + strandat 314.580 kb on - strandat 314.635 kb on - strandat 314.739 kb on - strand, within CCNA_00301at 314.739 kb on - strand, within CCNA_00301at 314.745 kb on + strand, within CCNA_00301at 314.769 kb on - strand, within CCNA_00301at 314.802 kb on - strand, within CCNA_00301at 314.821 kb on - strand, within CCNA_00301at 314.864 kb on + strand, within CCNA_00301at 314.885 kb on - strand, within CCNA_00301at 314.889 kb on + strand, within CCNA_00301at 314.907 kb on - strand, within CCNA_00301at 314.907 kb on - strand, within CCNA_00301at 314.934 kb on - strand, within CCNA_00301at 314.936 kb on - strand, within CCNA_00301at 314.938 kb on + strand, within CCNA_00301at 314.938 kb on + strand, within CCNA_00301at 314.938 kb on + strand, within CCNA_00301at 314.946 kb on - strand, within CCNA_00301at 314.946 kb on - strand, within CCNA_00301at 314.946 kb on - strand, within CCNA_00301

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with nitrite 2.5 mM
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311,690 - CCNA_00297 0.76 -2.0
311,690 - CCNA_00297 0.76 -0.4
311,690 - CCNA_00297 0.76 +1.4
311,706 - CCNA_00297 0.78 -1.3
311,741 + CCNA_00297 0.82 -1.9
311,741 + CCNA_00297 0.82 -0.6
311,751 + CCNA_00297 0.83 -2.1
311,754 - CCNA_00297 0.83 -0.6
311,765 - CCNA_00297 0.85 -1.7
311,772 + CCNA_00297 0.85 -0.5
311,775 - CCNA_00297 0.86 -0.9
311,846 + -0.3
311,846 + -0.2
311,846 + +0.2
311,846 + +0.8
311,854 - -0.4
311,889 + -1.4
311,897 - +0.2
311,897 - +0.4
311,900 + -1.0
311,936 + -2.6
311,954 + -0.6
311,954 + +0.4
311,962 + +1.2
311,962 + +0.2
311,962 - -0.4
311,967 + -0.5
311,980 - CCNA_00298 0.11 -0.9
312,004 + CCNA_00298 0.14 -1.2
312,033 + CCNA_00298 0.18 +1.4
312,041 - CCNA_00298 0.19 -1.2
312,077 + CCNA_00298 0.24 +0.4
312,077 + CCNA_00298 0.24 -1.0
312,085 - CCNA_00298 0.25 -1.0
312,085 - CCNA_00298 0.25 +0.9
312,085 - CCNA_00298 0.25 -0.6
312,104 + CCNA_00298 0.27 +0.0
312,111 + CCNA_00298 0.28 +0.0
312,123 + CCNA_00298 0.30 -1.0
312,137 - CCNA_00298 0.32 -2.0
312,147 - CCNA_00298 0.33 -0.3
312,155 + CCNA_00298 0.34 -0.8
312,155 + CCNA_00298 0.34 -1.3
312,155 + CCNA_00298 0.34 +0.4
312,155 + CCNA_00298 0.34 -1.6
312,163 - CCNA_00298 0.35 -0.0
312,163 - CCNA_00298 0.35 -1.2
312,163 - CCNA_00298 0.35 +0.0
312,163 - CCNA_00298 0.35 -0.9
312,168 - CCNA_00298 0.36 +0.5
312,178 - CCNA_00298 0.37 -1.0
312,180 + CCNA_00298 0.37 -1.2
312,180 + +1.4
312,180 + CCNA_00298 0.37 -1.0
312,187 - CCNA_00298 0.38 -2.4
312,188 - CCNA_00298 0.38 +2.4
312,188 - CCNA_00298 0.38 -0.2
312,188 - CCNA_00298 0.38 -0.6
312,188 - CCNA_00298 0.38 +0.4
312,200 - CCNA_00298 0.40 +0.4
312,215 + CCNA_00298 0.42 -2.3
312,215 - CCNA_00298 0.42 +0.4
312,222 - CCNA_00298 0.43 -1.3
312,223 - CCNA_00298 0.43 -2.2
312,259 - CCNA_00298 0.47 -1.3
312,262 + CCNA_00298 0.48 -0.6
312,303 + CCNA_00298 0.53 +1.4
312,318 - CCNA_00298 0.55 -1.0
312,319 + CCNA_00298 0.55 -1.0
312,327 - CCNA_00298 0.56 +1.4
312,350 + CCNA_00298 0.59 -1.4
312,358 - CCNA_00298 0.60 -1.4
312,387 + CCNA_00298 0.64 +0.4
312,397 + CCNA_00298 0.65 +1.4
312,405 - CCNA_00298 0.66 -2.5
312,414 + CCNA_00298 0.67 +0.4
312,415 + CCNA_00298 0.67 -1.3
312,422 - CCNA_00298 0.68 -0.6
312,423 - CCNA_00298 0.68 -1.4
312,432 + CCNA_00298 0.70 -0.6
312,434 + CCNA_00298 0.70 -1.8
312,457 + +1.4
312,484 - CCNA_00298 0.76 -1.2
312,510 + CCNA_00298 0.80 -1.6
312,518 - CCNA_00298 0.81 +0.6
312,529 - CCNA_00298 0.82 -0.6
312,542 - CCNA_00298 0.84 -0.9
312,542 - CCNA_00298 0.84 +1.8
312,545 + CCNA_00298 0.84 -2.7
312,553 - CCNA_00298 0.85 -0.5
312,555 - CCNA_00298 0.86 +1.4
312,568 - CCNA_00298 0.87 -1.6
312,616 - -2.1
312,616 - -1.9
312,636 - -1.6
312,646 - +1.9
312,752 - +1.1
312,866 - CCNA_00299 0.15 +0.7
312,892 + CCNA_00299 0.17 +0.9
312,900 - CCNA_00299 0.17 -1.7
312,952 + CCNA_00299 0.21 +1.2
312,988 + CCNA_00299 0.24 +2.0
312,996 - CCNA_00299 0.25 -0.6
313,080 + CCNA_00299 0.31 +2.5
313,090 + CCNA_00299 0.32 +1.0
313,117 - CCNA_00299 0.34 +1.0
313,141 - CCNA_00299 0.36 -0.4
313,165 + CCNA_00299 0.38 +1.4
313,188 + CCNA_00299 0.40 +1.4
313,234 - CCNA_00299 0.43 -1.2
313,250 - CCNA_00299 0.45 +1.4
313,309 - CCNA_00299 0.49 +0.6
313,311 + +1.8
313,319 - CCNA_00299 0.50 -0.2
313,319 - CCNA_00299 0.50 +1.4
313,410 + CCNA_00299 0.57 +0.4
313,415 + CCNA_00299 0.57 +3.4
313,423 - CCNA_00299 0.58 -0.9
313,423 - CCNA_00299 0.58 -2.2
313,423 - CCNA_00299 0.58 +1.9
313,423 - CCNA_00299 0.58 -0.4
313,484 + CCNA_00299 0.63 +1.5
313,492 - CCNA_00299 0.63 +0.1
313,523 - CCNA_00299 0.66 +0.4
313,532 + CCNA_00299 0.67 -0.5
313,551 - CCNA_00299 0.68 -1.4
313,567 + CCNA_00299 0.69 +1.2
313,569 - CCNA_00299 0.69 -0.2
313,575 - CCNA_00299 0.70 +0.7
313,596 + CCNA_00299 0.71 -0.6
313,631 + CCNA_00299 0.74 +1.2
313,680 + CCNA_00299 0.78 +1.7
313,694 + CCNA_00299 0.79 +3.0
313,800 - CCNA_00299 0.87 +0.6
313,857 - +1.8
314,001 + +0.2
314,025 + CCNA_00300 0.12 +0.2
314,029 - CCNA_00300 0.12 -0.4
314,033 - CCNA_00300 0.13 +0.4
314,033 - CCNA_00300 0.13 -1.6
314,040 - CCNA_00300 0.15 +0.5
314,064 - CCNA_00300 0.21 -0.8
314,127 + CCNA_00300 0.37 -0.6
314,135 - CCNA_00300 0.38 -0.4
314,153 + CCNA_00300 0.43 -0.2
314,153 + CCNA_00300 0.43 -1.1
314,153 + CCNA_00300 0.43 -0.4
314,153 + CCNA_00300 0.43 -3.1
314,153 + CCNA_00300 0.43 -0.7
314,155 - CCNA_00300 0.43 +0.8
314,161 - CCNA_00300 0.45 -0.6
314,161 - CCNA_00300 0.45 -0.3
314,166 - CCNA_00300 0.46 +0.3
314,166 - CCNA_00300 0.46 -1.1
314,166 - CCNA_00300 0.46 +0.6
314,166 - CCNA_00300 0.46 +1.1
314,166 - CCNA_00300 0.46 +0.7
314,186 - CCNA_00300 0.51 +1.2
314,204 - CCNA_00300 0.55 -0.4
314,205 - CCNA_00300 0.56 +0.1
314,210 - CCNA_00300 0.57 +0.1
314,238 + CCNA_00300 0.64 +0.6
314,238 + CCNA_00300 0.64 -0.0
314,246 - CCNA_00300 0.66 -0.0
314,246 - CCNA_00300 0.66 +1.4
314,247 - CCNA_00300 0.66 -0.8
314,256 - CCNA_00300 0.68 -2.3
314,332 - CCNA_00300 0.87 -0.4
314,339 + CCNA_00300 0.88 -1.0
314,380 - +0.3
314,392 + -0.2
314,392 - +1.1
314,399 - +1.1
314,400 - +0.5
314,445 + -0.4
314,471 - +1.0
314,503 - +1.8
314,551 + -0.2
314,580 - +0.4
314,635 - +0.3
314,739 - CCNA_00301 0.11 -0.6
314,739 - CCNA_00301 0.11 -0.6
314,745 + CCNA_00301 0.12 -0.6
314,769 - CCNA_00301 0.14 +0.5
314,802 - CCNA_00301 0.17 -0.2
314,821 - CCNA_00301 0.19 -2.3
314,864 + CCNA_00301 0.23 -1.6
314,885 - CCNA_00301 0.25 +0.4
314,889 + CCNA_00301 0.25 -0.4
314,907 - CCNA_00301 0.27 +1.4
314,907 - CCNA_00301 0.27 +0.9
314,934 - CCNA_00301 0.29 -1.6
314,936 - CCNA_00301 0.30 -1.8
314,938 + CCNA_00301 0.30 -1.6
314,938 + CCNA_00301 0.30 -0.4
314,938 + CCNA_00301 0.30 -0.6
314,946 - CCNA_00301 0.31 +0.6
314,946 - CCNA_00301 0.31 +0.4
314,946 - CCNA_00301 0.31 -1.9

Or see this region's nucleotide sequence