Experiment: Lactulose 20mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS24150 and CA265_RS24155 are separated by 400 nucleotides CA265_RS24155 and CA265_RS24160 are separated by 507 nucleotides
CA265_RS24150: CA265_RS24150 - dihydrolipoyl dehydrogenase, at 5,881,513 to 5,882,919
_RS24150
CA265_RS24155: CA265_RS24155 - alkaline phosphatase, at 5,883,320 to 5,884,852
_RS24155
CA265_RS24160: CA265_RS24160 - bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase, at 5,885,360 to 5,886,178
_RS24160
Position (kb) 5883
5884
5885 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 5882.909 kb on + strand at 5882.931 kb on + strand at 5882.932 kb on - strand at 5882.951 kb on + strand at 5883.048 kb on - strand at 5883.134 kb on - strand at 5883.261 kb on + strand at 5883.283 kb on + strand at 5883.370 kb on + strand at 5883.370 kb on + strand at 5883.477 kb on + strand, within CA265_RS24155 at 5883.477 kb on + strand, within CA265_RS24155 at 5883.510 kb on - strand, within CA265_RS24155 at 5883.531 kb on + strand, within CA265_RS24155 at 5883.538 kb on - strand, within CA265_RS24155 at 5883.616 kb on - strand, within CA265_RS24155 at 5883.714 kb on + strand, within CA265_RS24155 at 5883.762 kb on + strand, within CA265_RS24155 at 5883.790 kb on + strand, within CA265_RS24155 at 5883.809 kb on - strand, within CA265_RS24155 at 5883.809 kb on - strand, within CA265_RS24155 at 5883.845 kb on + strand, within CA265_RS24155 at 5883.846 kb on - strand, within CA265_RS24155 at 5883.847 kb on + strand, within CA265_RS24155 at 5883.979 kb on - strand, within CA265_RS24155 at 5883.991 kb on + strand, within CA265_RS24155 at 5884.046 kb on + strand, within CA265_RS24155 at 5884.047 kb on - strand, within CA265_RS24155 at 5884.047 kb on - strand, within CA265_RS24155 at 5884.047 kb on - strand, within CA265_RS24155 at 5884.047 kb on - strand, within CA265_RS24155 at 5884.051 kb on - strand, within CA265_RS24155 at 5884.051 kb on - strand, within CA265_RS24155 at 5884.129 kb on + strand, within CA265_RS24155 at 5884.130 kb on - strand, within CA265_RS24155 at 5884.130 kb on - strand, within CA265_RS24155 at 5884.256 kb on - strand, within CA265_RS24155 at 5884.288 kb on + strand, within CA265_RS24155 at 5884.369 kb on + strand, within CA265_RS24155 at 5884.408 kb on - strand, within CA265_RS24155 at 5884.428 kb on + strand, within CA265_RS24155 at 5884.455 kb on + strand, within CA265_RS24155 at 5884.455 kb on + strand, within CA265_RS24155 at 5884.455 kb on + strand, within CA265_RS24155 at 5884.456 kb on - strand, within CA265_RS24155 at 5884.456 kb on - strand, within CA265_RS24155 at 5884.456 kb on - strand, within CA265_RS24155 at 5884.456 kb on - strand, within CA265_RS24155 at 5884.457 kb on + strand, within CA265_RS24155 at 5884.563 kb on - strand, within CA265_RS24155 at 5884.585 kb on + strand, within CA265_RS24155 at 5884.593 kb on + strand, within CA265_RS24155 at 5884.599 kb on + strand, within CA265_RS24155 at 5884.599 kb on + strand, within CA265_RS24155 at 5884.666 kb on + strand, within CA265_RS24155 at 5884.666 kb on + strand, within CA265_RS24155 at 5884.666 kb on + strand, within CA265_RS24155 at 5884.686 kb on + strand, within CA265_RS24155 at 5884.686 kb on + strand, within CA265_RS24155 at 5884.686 kb on + strand, within CA265_RS24155 at 5884.687 kb on - strand, within CA265_RS24155 at 5884.687 kb on - strand, within CA265_RS24155 at 5884.833 kb on - strand at 5884.874 kb on - strand at 5885.069 kb on + strand at 5885.098 kb on + strand at 5885.100 kb on + strand at 5885.113 kb on - strand at 5885.139 kb on + strand at 5885.155 kb on - strand at 5885.157 kb on - strand at 5885.167 kb on + strand at 5885.209 kb on + strand at 5885.224 kb on - strand at 5885.239 kb on + strand at 5885.278 kb on - strand at 5885.334 kb on + strand at 5885.366 kb on + strand at 5885.367 kb on - strand at 5885.376 kb on + strand at 5885.376 kb on + strand at 5885.377 kb on - strand at 5885.377 kb on - strand at 5885.377 kb on - strand at 5885.473 kb on + strand, within CA265_RS24160 at 5885.474 kb on - strand, within CA265_RS24160 at 5885.551 kb on - strand at 5885.570 kb on - strand, within CA265_RS24160 at 5885.572 kb on - strand, within CA265_RS24160 at 5885.572 kb on - strand, within CA265_RS24160 at 5885.572 kb on - strand, within CA265_RS24160 at 5885.572 kb on - strand, within CA265_RS24160 at 5885.657 kb on + strand, within CA265_RS24160 at 5885.771 kb on - strand, within CA265_RS24160
Per-strain Table
Position Strand Gene LocusTag Fraction Lactulose 20mM (C) remove 5,882,909 + -2.1 5,882,931 + -0.7 5,882,932 - -2.4 5,882,951 + -4.0 5,883,048 - -0.8 5,883,134 - +0.9 5,883,261 + -3.8 5,883,283 + +0.1 5,883,370 + +0.5 5,883,370 + -2.5 5,883,477 + CA265_RS24155 0.10 +0.5 5,883,477 + CA265_RS24155 0.10 -3.0 5,883,510 - CA265_RS24155 0.12 -2.5 5,883,531 + CA265_RS24155 0.14 -3.0 5,883,538 - CA265_RS24155 0.14 +1.1 5,883,616 - CA265_RS24155 0.19 -0.6 5,883,714 + CA265_RS24155 0.26 +1.9 5,883,762 + CA265_RS24155 0.29 +1.1 5,883,790 + CA265_RS24155 0.31 -2.4 5,883,809 - CA265_RS24155 0.32 +1.4 5,883,809 - CA265_RS24155 0.32 -1.1 5,883,845 + CA265_RS24155 0.34 +0.5 5,883,846 - CA265_RS24155 0.34 +2.6 5,883,847 + CA265_RS24155 0.34 -2.3 5,883,979 - CA265_RS24155 0.43 +1.9 5,883,991 + CA265_RS24155 0.44 +1.5 5,884,046 + CA265_RS24155 0.47 -2.9 5,884,047 - CA265_RS24155 0.47 +1.6 5,884,047 - CA265_RS24155 0.47 +3.4 5,884,047 - CA265_RS24155 0.47 +0.3 5,884,047 - CA265_RS24155 0.47 +1.5 5,884,051 - CA265_RS24155 0.48 -0.1 5,884,051 - CA265_RS24155 0.48 -2.5 5,884,129 + CA265_RS24155 0.53 -2.3 5,884,130 - CA265_RS24155 0.53 -2.4 5,884,130 - CA265_RS24155 0.53 -1.1 5,884,256 - CA265_RS24155 0.61 +0.3 5,884,288 + CA265_RS24155 0.63 +1.7 5,884,369 + CA265_RS24155 0.68 +0.9 5,884,408 - CA265_RS24155 0.71 +3.0 5,884,428 + CA265_RS24155 0.72 -2.3 5,884,455 + CA265_RS24155 0.74 -2.8 5,884,455 + CA265_RS24155 0.74 +1.2 5,884,455 + CA265_RS24155 0.74 -0.8 5,884,456 - CA265_RS24155 0.74 +0.6 5,884,456 - CA265_RS24155 0.74 -0.3 5,884,456 - CA265_RS24155 0.74 +1.0 5,884,456 - CA265_RS24155 0.74 +0.1 5,884,457 + CA265_RS24155 0.74 -2.1 5,884,563 - CA265_RS24155 0.81 -0.2 5,884,585 + CA265_RS24155 0.83 -0.4 5,884,593 + CA265_RS24155 0.83 +0.1 5,884,599 + CA265_RS24155 0.83 +2.8 5,884,599 + CA265_RS24155 0.83 +1.0 5,884,666 + CA265_RS24155 0.88 -0.9 5,884,666 + CA265_RS24155 0.88 +2.0 5,884,666 + CA265_RS24155 0.88 -0.3 5,884,686 + CA265_RS24155 0.89 +1.8 5,884,686 + CA265_RS24155 0.89 +2.4 5,884,686 + CA265_RS24155 0.89 +1.6 5,884,687 - CA265_RS24155 0.89 +1.1 5,884,687 - CA265_RS24155 0.89 +1.6 5,884,833 - +0.9 5,884,874 - +0.8 5,885,069 + -2.6 5,885,098 + -0.1 5,885,100 + -2.4 5,885,113 - -3.5 5,885,139 + +2.6 5,885,155 - +1.2 5,885,157 - -2.2 5,885,167 + -1.2 5,885,209 + -2.9 5,885,224 - -3.5 5,885,239 + +2.7 5,885,278 - +1.0 5,885,334 + -2.4 5,885,366 + -3.1 5,885,367 - +0.2 5,885,376 + -2.8 5,885,376 + -0.6 5,885,377 - +2.5 5,885,377 - -1.8 5,885,377 - +2.7 5,885,473 + CA265_RS24160 0.14 -1.1 5,885,474 - CA265_RS24160 0.14 -0.6 5,885,551 - +1.9 5,885,570 - CA265_RS24160 0.26 -1.9 5,885,572 - CA265_RS24160 0.26 -0.4 5,885,572 - CA265_RS24160 0.26 -2.5 5,885,572 - CA265_RS24160 0.26 +0.9 5,885,572 - CA265_RS24160 0.26 +0.6 5,885,657 + CA265_RS24160 0.36 -0.1 5,885,771 - CA265_RS24160 0.50 -0.6
Or see this region's nucleotide sequence