Experiment: Lactulose 20mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS03995 and CA265_RS04000 are separated by 197 nucleotides CA265_RS04000 and CA265_RS04005 are separated by 47 nucleotides CA265_RS04005 and CA265_RS04010 are separated by 4 nucleotides CA265_RS04010 and CA265_RS04015 are separated by 11 nucleotides
CA265_RS03995: CA265_RS03995 - hypothetical protein, at 955,023 to 956,654
_RS03995
CA265_RS04000: CA265_RS04000 - hypothetical protein, at 956,852 to 957,172
_RS04000
CA265_RS04005: CA265_RS04005 - hypothetical protein, at 957,220 to 958,779
_RS04005
CA265_RS04010: CA265_RS04010 - hypothetical protein, at 958,784 to 959,728
_RS04010
CA265_RS04015: CA265_RS04015 - ABC transporter ATP-binding protein, at 959,740 to 961,941
_RS04015
Position (kb) 957
958
959 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 956.313 kb on - strand, within CA265_RS03995 at 956.313 kb on - strand, within CA265_RS03995 at 956.336 kb on - strand, within CA265_RS03995 at 956.336 kb on - strand, within CA265_RS03995 at 956.340 kb on - strand, within CA265_RS03995 at 956.340 kb on - strand, within CA265_RS03995 at 956.346 kb on + strand, within CA265_RS03995 at 956.381 kb on - strand, within CA265_RS03995 at 956.517 kb on + strand at 956.518 kb on - strand at 956.522 kb on + strand at 956.586 kb on + strand at 956.599 kb on - strand at 956.632 kb on + strand at 956.673 kb on - strand at 956.730 kb on + strand at 956.764 kb on - strand at 956.790 kb on - strand at 956.802 kb on + strand at 956.813 kb on + strand at 956.947 kb on + strand, within CA265_RS04000 at 956.970 kb on + strand, within CA265_RS04000 at 957.053 kb on + strand, within CA265_RS04000 at 957.056 kb on + strand, within CA265_RS04000 at 957.078 kb on + strand, within CA265_RS04000 at 957.146 kb on - strand at 957.149 kb on + strand at 957.156 kb on - strand at 957.156 kb on - strand at 957.164 kb on - strand at 957.171 kb on - strand at 957.188 kb on + strand at 957.189 kb on - strand at 957.201 kb on - strand at 957.227 kb on - strand at 957.275 kb on + strand at 957.276 kb on - strand at 957.300 kb on - strand at 957.357 kb on - strand at 957.415 kb on + strand, within CA265_RS04005 at 957.417 kb on + strand, within CA265_RS04005 at 957.445 kb on - strand, within CA265_RS04005 at 957.516 kb on - strand, within CA265_RS04005 at 957.543 kb on - strand, within CA265_RS04005 at 957.546 kb on + strand, within CA265_RS04005 at 957.570 kb on - strand, within CA265_RS04005 at 957.584 kb on + strand, within CA265_RS04005 at 957.584 kb on + strand, within CA265_RS04005 at 957.584 kb on + strand, within CA265_RS04005 at 957.584 kb on + strand, within CA265_RS04005 at 957.584 kb on + strand, within CA265_RS04005 at 957.585 kb on - strand, within CA265_RS04005 at 957.589 kb on + strand, within CA265_RS04005 at 957.589 kb on + strand, within CA265_RS04005 at 957.611 kb on - strand, within CA265_RS04005 at 957.625 kb on + strand, within CA265_RS04005 at 957.626 kb on - strand, within CA265_RS04005 at 957.626 kb on - strand, within CA265_RS04005 at 957.634 kb on - strand, within CA265_RS04005 at 957.736 kb on - strand, within CA265_RS04005 at 957.802 kb on - strand, within CA265_RS04005 at 957.803 kb on + strand, within CA265_RS04005 at 957.803 kb on + strand, within CA265_RS04005 at 957.881 kb on + strand, within CA265_RS04005 at 957.900 kb on + strand, within CA265_RS04005 at 957.900 kb on + strand, within CA265_RS04005 at 957.982 kb on - strand, within CA265_RS04005 at 958.047 kb on + strand, within CA265_RS04005 at 958.048 kb on - strand, within CA265_RS04005 at 958.124 kb on + strand, within CA265_RS04005 at 958.152 kb on - strand, within CA265_RS04005 at 958.271 kb on - strand, within CA265_RS04005 at 958.271 kb on - strand, within CA265_RS04005 at 958.271 kb on - strand at 958.414 kb on + strand, within CA265_RS04005 at 958.427 kb on + strand, within CA265_RS04005 at 958.444 kb on + strand, within CA265_RS04005 at 958.568 kb on + strand, within CA265_RS04005 at 958.572 kb on + strand, within CA265_RS04005 at 958.573 kb on - strand, within CA265_RS04005 at 958.574 kb on + strand, within CA265_RS04005 at 958.696 kb on + strand at 958.697 kb on - strand at 958.749 kb on + strand at 958.781 kb on + strand at 958.789 kb on + strand at 958.807 kb on + strand at 958.833 kb on + strand at 958.833 kb on + strand at 958.833 kb on + strand at 958.834 kb on - strand at 958.932 kb on + strand, within CA265_RS04010 at 958.940 kb on + strand, within CA265_RS04010 at 958.941 kb on - strand, within CA265_RS04010 at 958.942 kb on + strand, within CA265_RS04010 at 958.942 kb on + strand, within CA265_RS04010 at 958.982 kb on - strand, within CA265_RS04010 at 959.015 kb on - strand, within CA265_RS04010 at 959.047 kb on + strand, within CA265_RS04010 at 959.068 kb on - strand, within CA265_RS04010 at 959.090 kb on + strand, within CA265_RS04010 at 959.154 kb on + strand, within CA265_RS04010 at 959.165 kb on + strand, within CA265_RS04010 at 959.180 kb on - strand, within CA265_RS04010 at 959.242 kb on - strand, within CA265_RS04010 at 959.274 kb on + strand, within CA265_RS04010 at 959.291 kb on - strand, within CA265_RS04010 at 959.308 kb on - strand, within CA265_RS04010 at 959.322 kb on + strand, within CA265_RS04010 at 959.396 kb on + strand, within CA265_RS04010 at 959.449 kb on + strand, within CA265_RS04010 at 959.479 kb on - strand, within CA265_RS04010 at 959.489 kb on + strand, within CA265_RS04010 at 959.509 kb on + strand, within CA265_RS04010 at 959.570 kb on + strand, within CA265_RS04010 at 959.571 kb on - strand, within CA265_RS04010 at 959.647 kb on - strand at 959.671 kb on - strand at 959.693 kb on + strand at 959.694 kb on - strand at 959.696 kb on - strand at 959.722 kb on + strand at 959.737 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Lactulose 20mM (C) remove 956,313 - CA265_RS03995 0.79 +0.5 956,313 - CA265_RS03995 0.79 +0.4 956,336 - CA265_RS03995 0.80 +1.0 956,336 - CA265_RS03995 0.80 +0.1 956,340 - CA265_RS03995 0.81 +2.9 956,340 - CA265_RS03995 0.81 +2.2 956,346 + CA265_RS03995 0.81 +0.4 956,381 - CA265_RS03995 0.83 +1.5 956,517 + -3.4 956,518 - -1.3 956,522 + +1.2 956,586 + +2.2 956,599 - +1.1 956,632 + +1.8 956,673 - +4.5 956,730 + +1.1 956,764 - -1.4 956,790 - +1.4 956,802 + +2.6 956,813 + +3.4 956,947 + CA265_RS04000 0.30 -0.6 956,970 + CA265_RS04000 0.37 +2.8 957,053 + CA265_RS04000 0.63 +0.9 957,056 + CA265_RS04000 0.64 -1.5 957,078 + CA265_RS04000 0.70 +2.4 957,146 - +0.7 957,149 + +2.9 957,156 - -0.9 957,156 - -1.3 957,164 - -1.9 957,171 - +1.1 957,188 + +1.6 957,189 - +0.4 957,201 - -0.4 957,227 - -0.5 957,275 + +1.1 957,276 - -1.1 957,300 - -3.3 957,357 - -0.8 957,415 + CA265_RS04005 0.12 +0.8 957,417 + CA265_RS04005 0.13 +2.4 957,445 - CA265_RS04005 0.14 +1.0 957,516 - CA265_RS04005 0.19 +1.8 957,543 - CA265_RS04005 0.21 -2.4 957,546 + CA265_RS04005 0.21 +0.5 957,570 - CA265_RS04005 0.22 +1.0 957,584 + CA265_RS04005 0.23 -2.9 957,584 + CA265_RS04005 0.23 +1.5 957,584 + CA265_RS04005 0.23 +1.0 957,584 + CA265_RS04005 0.23 +1.6 957,584 + CA265_RS04005 0.23 +1.3 957,585 - CA265_RS04005 0.23 +1.4 957,589 + CA265_RS04005 0.24 +1.2 957,589 + CA265_RS04005 0.24 +2.2 957,611 - CA265_RS04005 0.25 +2.3 957,625 + CA265_RS04005 0.26 +2.8 957,626 - CA265_RS04005 0.26 +0.1 957,626 - CA265_RS04005 0.26 +0.3 957,634 - CA265_RS04005 0.27 +1.4 957,736 - CA265_RS04005 0.33 +0.2 957,802 - CA265_RS04005 0.37 +0.5 957,803 + CA265_RS04005 0.37 +2.4 957,803 + CA265_RS04005 0.37 +1.1 957,881 + CA265_RS04005 0.42 +1.8 957,900 + CA265_RS04005 0.44 -1.0 957,900 + CA265_RS04005 0.44 +1.7 957,982 - CA265_RS04005 0.49 -3.8 958,047 + CA265_RS04005 0.53 +1.8 958,048 - CA265_RS04005 0.53 -1.5 958,124 + CA265_RS04005 0.58 +1.8 958,152 - CA265_RS04005 0.60 +0.6 958,271 - CA265_RS04005 0.67 +0.5 958,271 - CA265_RS04005 0.67 -3.9 958,271 - -1.5 958,414 + CA265_RS04005 0.77 +3.7 958,427 + CA265_RS04005 0.77 +2.8 958,444 + CA265_RS04005 0.78 +3.7 958,568 + CA265_RS04005 0.86 +3.7 958,572 + CA265_RS04005 0.87 +1.9 958,573 - CA265_RS04005 0.87 +0.6 958,574 + CA265_RS04005 0.87 +2.7 958,696 + +2.9 958,697 - -3.9 958,749 + +1.7 958,781 + +2.1 958,789 + +4.0 958,807 + +3.9 958,833 + +2.0 958,833 + +3.5 958,833 + +2.5 958,834 - -2.6 958,932 + CA265_RS04010 0.16 +1.5 958,940 + CA265_RS04010 0.17 +1.7 958,941 - CA265_RS04010 0.17 -0.7 958,942 + CA265_RS04010 0.17 +3.4 958,942 + CA265_RS04010 0.17 +1.5 958,982 - CA265_RS04010 0.21 -1.8 959,015 - CA265_RS04010 0.24 -0.4 959,047 + CA265_RS04010 0.28 +2.0 959,068 - CA265_RS04010 0.30 -2.0 959,090 + CA265_RS04010 0.32 +1.8 959,154 + CA265_RS04010 0.39 +2.6 959,165 + CA265_RS04010 0.40 +1.9 959,180 - CA265_RS04010 0.42 +2.9 959,242 - CA265_RS04010 0.48 -0.5 959,274 + CA265_RS04010 0.52 +3.8 959,291 - CA265_RS04010 0.54 +2.0 959,308 - CA265_RS04010 0.55 +0.6 959,322 + CA265_RS04010 0.57 +2.2 959,396 + CA265_RS04010 0.65 +4.4 959,449 + CA265_RS04010 0.70 +2.7 959,479 - CA265_RS04010 0.74 -4.0 959,489 + CA265_RS04010 0.75 +3.4 959,509 + CA265_RS04010 0.77 +3.7 959,570 + CA265_RS04010 0.83 +2.4 959,571 - CA265_RS04010 0.83 +0.9 959,647 - -1.2 959,671 - -0.8 959,693 + +3.2 959,694 - +2.1 959,696 - +4.8 959,722 + +2.4 959,737 + +1.2
Or see this region's nucleotide sequence