Experiment: Lactulose 20mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS03425 and CA265_RS03430 overlap by 23 nucleotides CA265_RS03430 and CA265_RS03435 are separated by 1 nucleotides CA265_RS03435 and CA265_RS03440 are separated by 181 nucleotides
CA265_RS03425: CA265_RS03425 - FAD-dependent oxidoreductase, at 828,009 to 829,664
_RS03425
CA265_RS03430: CA265_RS03430 - spermidine synthase, at 829,642 to 831,153
_RS03430
CA265_RS03435: CA265_RS03435 - hypothetical protein, at 831,155 to 831,379
_RS03435
CA265_RS03440: CA265_RS03440 - hypothetical protein, at 831,561 to 832,874
_RS03440
Position (kb) 829
830
831
832 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 828.649 kb on - strand, within CA265_RS03425 at 828.651 kb on - strand, within CA265_RS03425 at 828.684 kb on + strand, within CA265_RS03425 at 828.685 kb on - strand, within CA265_RS03425 at 828.685 kb on - strand, within CA265_RS03425 at 828.765 kb on + strand, within CA265_RS03425 at 828.814 kb on + strand, within CA265_RS03425 at 828.837 kb on + strand, within CA265_RS03425 at 828.842 kb on + strand, within CA265_RS03425 at 828.859 kb on + strand, within CA265_RS03425 at 828.859 kb on + strand, within CA265_RS03425 at 828.877 kb on + strand, within CA265_RS03425 at 828.887 kb on - strand, within CA265_RS03425 at 828.892 kb on - strand, within CA265_RS03425 at 828.899 kb on - strand, within CA265_RS03425 at 829.044 kb on + strand, within CA265_RS03425 at 829.178 kb on - strand, within CA265_RS03425 at 829.214 kb on + strand, within CA265_RS03425 at 829.268 kb on + strand, within CA265_RS03425 at 829.268 kb on + strand, within CA265_RS03425 at 829.298 kb on + strand, within CA265_RS03425 at 829.301 kb on + strand, within CA265_RS03425 at 829.301 kb on + strand, within CA265_RS03425 at 829.302 kb on - strand, within CA265_RS03425 at 829.302 kb on - strand, within CA265_RS03425 at 829.302 kb on - strand, within CA265_RS03425 at 829.434 kb on + strand, within CA265_RS03425 at 829.512 kb on + strand at 829.513 kb on - strand at 829.538 kb on + strand at 829.625 kb on - strand at 829.705 kb on + strand at 829.705 kb on + strand at 829.786 kb on - strand at 829.789 kb on + strand at 829.794 kb on - strand, within CA265_RS03430 at 829.794 kb on - strand, within CA265_RS03430 at 829.836 kb on + strand at 829.837 kb on - strand, within CA265_RS03430 at 829.868 kb on + strand, within CA265_RS03430 at 829.869 kb on - strand, within CA265_RS03430 at 829.957 kb on - strand, within CA265_RS03430 at 829.980 kb on + strand, within CA265_RS03430 at 829.990 kb on + strand, within CA265_RS03430 at 829.990 kb on + strand, within CA265_RS03430 at 829.991 kb on - strand, within CA265_RS03430 at 829.991 kb on - strand, within CA265_RS03430 at 829.991 kb on - strand, within CA265_RS03430 at 829.991 kb on - strand, within CA265_RS03430 at 830.025 kb on - strand, within CA265_RS03430 at 830.027 kb on - strand, within CA265_RS03430 at 830.027 kb on - strand, within CA265_RS03430 at 830.134 kb on + strand, within CA265_RS03430 at 830.134 kb on + strand, within CA265_RS03430 at 830.160 kb on + strand, within CA265_RS03430 at 830.221 kb on + strand, within CA265_RS03430 at 830.222 kb on - strand, within CA265_RS03430 at 830.240 kb on - strand, within CA265_RS03430 at 830.245 kb on - strand, within CA265_RS03430 at 830.249 kb on + strand, within CA265_RS03430 at 830.300 kb on - strand, within CA265_RS03430 at 830.464 kb on + strand, within CA265_RS03430 at 830.464 kb on + strand, within CA265_RS03430 at 830.464 kb on + strand, within CA265_RS03430 at 830.465 kb on - strand, within CA265_RS03430 at 830.465 kb on - strand, within CA265_RS03430 at 830.465 kb on - strand, within CA265_RS03430 at 830.480 kb on + strand, within CA265_RS03430 at 830.481 kb on - strand, within CA265_RS03430 at 830.611 kb on + strand, within CA265_RS03430 at 830.612 kb on - strand, within CA265_RS03430 at 830.612 kb on - strand, within CA265_RS03430 at 830.617 kb on + strand, within CA265_RS03430 at 830.779 kb on - strand, within CA265_RS03430 at 830.844 kb on - strand, within CA265_RS03430 at 830.973 kb on + strand, within CA265_RS03430 at 830.973 kb on + strand, within CA265_RS03430 at 830.989 kb on + strand, within CA265_RS03430 at 830.990 kb on - strand, within CA265_RS03430 at 830.990 kb on - strand, within CA265_RS03430 at 830.997 kb on + strand, within CA265_RS03430 at 831.087 kb on - strand at 831.088 kb on + strand at 831.089 kb on - strand at 831.090 kb on + strand at 831.090 kb on + strand at 831.090 kb on + strand at 831.128 kb on - strand at 831.156 kb on + strand at 831.178 kb on + strand, within CA265_RS03435 at 831.181 kb on + strand, within CA265_RS03435 at 831.199 kb on + strand, within CA265_RS03435 at 831.200 kb on - strand, within CA265_RS03435 at 831.327 kb on + strand, within CA265_RS03435 at 831.344 kb on - strand at 831.348 kb on + strand, within CA265_RS03435 at 831.371 kb on + strand at 831.389 kb on - strand at 831.404 kb on + strand at 831.409 kb on - strand at 831.409 kb on - strand at 831.428 kb on + strand at 831.462 kb on - strand at 831.497 kb on - strand at 831.511 kb on - strand at 831.525 kb on + strand at 831.526 kb on - strand at 831.562 kb on + strand at 831.654 kb on - strand at 831.718 kb on + strand, within CA265_RS03440 at 831.735 kb on + strand, within CA265_RS03440 at 831.755 kb on - strand, within CA265_RS03440 at 831.755 kb on - strand, within CA265_RS03440 at 831.762 kb on + strand, within CA265_RS03440 at 831.798 kb on - strand, within CA265_RS03440 at 831.798 kb on - strand, within CA265_RS03440 at 831.874 kb on - strand, within CA265_RS03440 at 831.874 kb on - strand, within CA265_RS03440 at 831.910 kb on - strand, within CA265_RS03440 at 831.932 kb on + strand, within CA265_RS03440 at 831.932 kb on + strand, within CA265_RS03440 at 832.101 kb on + strand, within CA265_RS03440 at 832.101 kb on + strand, within CA265_RS03440 at 832.102 kb on - strand, within CA265_RS03440 at 832.142 kb on + strand, within CA265_RS03440 at 832.142 kb on + strand, within CA265_RS03440 at 832.142 kb on + strand, within CA265_RS03440
Per-strain Table
Position Strand Gene LocusTag Fraction Lactulose 20mM (C) remove 828,649 - CA265_RS03425 0.39 -0.2 828,651 - CA265_RS03425 0.39 +0.5 828,684 + CA265_RS03425 0.41 -0.7 828,685 - CA265_RS03425 0.41 -0.5 828,685 - CA265_RS03425 0.41 +1.8 828,765 + CA265_RS03425 0.46 -1.1 828,814 + CA265_RS03425 0.49 -1.6 828,837 + CA265_RS03425 0.50 -2.6 828,842 + CA265_RS03425 0.50 +1.2 828,859 + CA265_RS03425 0.51 +0.0 828,859 + CA265_RS03425 0.51 +0.6 828,877 + CA265_RS03425 0.52 +0.2 828,887 - CA265_RS03425 0.53 +0.0 828,892 - CA265_RS03425 0.53 +1.7 828,899 - CA265_RS03425 0.54 -1.3 829,044 + CA265_RS03425 0.62 +1.6 829,178 - CA265_RS03425 0.71 -0.5 829,214 + CA265_RS03425 0.73 -0.5 829,268 + CA265_RS03425 0.76 +0.5 829,268 + CA265_RS03425 0.76 +1.9 829,298 + CA265_RS03425 0.78 +0.7 829,301 + CA265_RS03425 0.78 -0.9 829,301 + CA265_RS03425 0.78 +0.5 829,302 - CA265_RS03425 0.78 +2.1 829,302 - CA265_RS03425 0.78 +1.9 829,302 - CA265_RS03425 0.78 +0.0 829,434 + CA265_RS03425 0.86 +0.3 829,512 + -2.3 829,513 - +0.5 829,538 + -2.4 829,625 - +0.2 829,705 + -0.3 829,705 + -1.7 829,786 - +2.5 829,789 + -1.1 829,794 - CA265_RS03430 0.10 -0.5 829,794 - CA265_RS03430 0.10 +0.6 829,836 + -0.8 829,837 - CA265_RS03430 0.13 +1.5 829,868 + CA265_RS03430 0.15 -0.3 829,869 - CA265_RS03430 0.15 +1.4 829,957 - CA265_RS03430 0.21 +0.2 829,980 + CA265_RS03430 0.22 +3.1 829,990 + CA265_RS03430 0.23 -2.2 829,990 + CA265_RS03430 0.23 -0.6 829,991 - CA265_RS03430 0.23 -0.2 829,991 - CA265_RS03430 0.23 -0.7 829,991 - CA265_RS03430 0.23 -2.4 829,991 - CA265_RS03430 0.23 -0.6 830,025 - CA265_RS03430 0.25 +1.9 830,027 - CA265_RS03430 0.25 -0.9 830,027 - CA265_RS03430 0.25 +0.9 830,134 + CA265_RS03430 0.33 +1.3 830,134 + CA265_RS03430 0.33 +1.4 830,160 + CA265_RS03430 0.34 +1.3 830,221 + CA265_RS03430 0.38 +0.3 830,222 - CA265_RS03430 0.38 +2.3 830,240 - CA265_RS03430 0.40 -0.8 830,245 - CA265_RS03430 0.40 -3.4 830,249 + CA265_RS03430 0.40 +0.4 830,300 - CA265_RS03430 0.44 +1.0 830,464 + CA265_RS03430 0.54 -3.0 830,464 + CA265_RS03430 0.54 -2.9 830,464 + CA265_RS03430 0.54 -2.0 830,465 - CA265_RS03430 0.54 +0.2 830,465 - CA265_RS03430 0.54 -0.4 830,465 - CA265_RS03430 0.54 +1.2 830,480 + CA265_RS03430 0.55 -2.9 830,481 - CA265_RS03430 0.55 +1.5 830,611 + CA265_RS03430 0.64 +0.2 830,612 - CA265_RS03430 0.64 -0.5 830,612 - CA265_RS03430 0.64 -0.2 830,617 + CA265_RS03430 0.64 +1.6 830,779 - CA265_RS03430 0.75 +4.2 830,844 - CA265_RS03430 0.79 -2.8 830,973 + CA265_RS03430 0.88 -1.9 830,973 + CA265_RS03430 0.88 -1.9 830,989 + CA265_RS03430 0.89 +1.1 830,990 - CA265_RS03430 0.89 -2.5 830,990 - CA265_RS03430 0.89 -0.3 830,997 + CA265_RS03430 0.90 -0.9 831,087 - -2.1 831,088 + -0.6 831,089 - -3.0 831,090 + +1.6 831,090 + +1.1 831,090 + +0.1 831,128 - -0.5 831,156 + +2.5 831,178 + CA265_RS03435 0.10 +0.6 831,181 + CA265_RS03435 0.12 -4.0 831,199 + CA265_RS03435 0.20 +1.0 831,200 - CA265_RS03435 0.20 -0.3 831,327 + CA265_RS03435 0.76 -0.5 831,344 - -0.8 831,348 + CA265_RS03435 0.86 -0.1 831,371 + +0.4 831,389 - +0.1 831,404 + +0.1 831,409 - -1.6 831,409 - -4.0 831,428 + -1.7 831,462 - -0.2 831,497 - -1.5 831,511 - -0.9 831,525 + +0.0 831,526 - -3.3 831,562 + +0.6 831,654 - +0.2 831,718 + CA265_RS03440 0.12 -0.9 831,735 + CA265_RS03440 0.13 -4.4 831,755 - CA265_RS03440 0.15 +0.2 831,755 - CA265_RS03440 0.15 -0.2 831,762 + CA265_RS03440 0.15 -4.2 831,798 - CA265_RS03440 0.18 +0.9 831,798 - CA265_RS03440 0.18 +0.3 831,874 - CA265_RS03440 0.24 +1.4 831,874 - CA265_RS03440 0.24 -0.0 831,910 - CA265_RS03440 0.27 -2.2 831,932 + CA265_RS03440 0.28 -3.9 831,932 + CA265_RS03440 0.28 -0.3 832,101 + CA265_RS03440 0.41 -0.3 832,101 + CA265_RS03440 0.41 +2.1 832,102 - CA265_RS03440 0.41 +0.1 832,142 + CA265_RS03440 0.44 -2.1 832,142 + CA265_RS03440 0.44 -2.9 832,142 + CA265_RS03440 0.44 -0.2
Or see this region's nucleotide sequence