Experiment: Lactulose 20mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS03080 and CA265_RS03085 are separated by 150 nucleotides CA265_RS03085 and CA265_RS03090 are separated by 614 nucleotides
CA265_RS03080: CA265_RS03080 - malate dehydrogenase, at 762,147 to 763,085
_RS03080
CA265_RS03085: CA265_RS03085 - hypothetical protein, at 763,236 to 763,688
_RS03085
CA265_RS03090: CA265_RS03090 - DNA polymerase III subunit alpha, at 764,303 to 768,736
_RS03090
Position (kb) 763
764 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 762.275 kb on + strand, within CA265_RS03080 at 762.286 kb on - strand, within CA265_RS03080 at 762.291 kb on + strand, within CA265_RS03080 at 762.300 kb on - strand, within CA265_RS03080 at 762.426 kb on + strand, within CA265_RS03080 at 762.458 kb on + strand, within CA265_RS03080 at 762.483 kb on - strand, within CA265_RS03080 at 762.501 kb on - strand, within CA265_RS03080 at 762.520 kb on + strand, within CA265_RS03080 at 762.555 kb on - strand, within CA265_RS03080 at 762.607 kb on - strand, within CA265_RS03080 at 762.623 kb on - strand, within CA265_RS03080 at 762.706 kb on + strand, within CA265_RS03080 at 762.707 kb on - strand, within CA265_RS03080 at 762.803 kb on + strand, within CA265_RS03080 at 762.806 kb on + strand, within CA265_RS03080 at 762.858 kb on - strand, within CA265_RS03080 at 762.892 kb on + strand, within CA265_RS03080 at 762.993 kb on + strand at 763.115 kb on + strand at 763.145 kb on + strand at 763.196 kb on - strand at 763.198 kb on + strand at 763.269 kb on - strand at 763.284 kb on - strand, within CA265_RS03085 at 763.290 kb on + strand, within CA265_RS03085 at 763.291 kb on - strand, within CA265_RS03085 at 763.341 kb on - strand, within CA265_RS03085 at 763.385 kb on + strand, within CA265_RS03085 at 763.388 kb on + strand, within CA265_RS03085 at 763.389 kb on - strand, within CA265_RS03085 at 763.389 kb on - strand, within CA265_RS03085 at 763.497 kb on - strand, within CA265_RS03085 at 763.535 kb on + strand, within CA265_RS03085 at 763.536 kb on - strand, within CA265_RS03085 at 763.540 kb on - strand, within CA265_RS03085 at 763.550 kb on - strand, within CA265_RS03085 at 763.569 kb on + strand, within CA265_RS03085 at 763.718 kb on + strand at 763.736 kb on - strand at 763.784 kb on + strand at 763.785 kb on - strand at 763.831 kb on + strand at 763.845 kb on - strand at 763.851 kb on - strand at 763.855 kb on + strand at 763.855 kb on + strand at 763.856 kb on - strand at 763.924 kb on - strand at 763.936 kb on + strand at 763.943 kb on + strand at 763.999 kb on - strand at 764.021 kb on - strand at 764.135 kb on - strand at 764.177 kb on - strand at 764.189 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Lactulose 20mM (C) remove 762,275 + CA265_RS03080 0.14 +0.6 762,286 - CA265_RS03080 0.15 -3.3 762,291 + CA265_RS03080 0.15 +0.2 762,300 - CA265_RS03080 0.16 -2.2 762,426 + CA265_RS03080 0.30 -0.2 762,458 + CA265_RS03080 0.33 -0.2 762,483 - CA265_RS03080 0.36 -3.1 762,501 - CA265_RS03080 0.38 -4.5 762,520 + CA265_RS03080 0.40 +0.6 762,555 - CA265_RS03080 0.43 -2.1 762,607 - CA265_RS03080 0.49 -1.1 762,623 - CA265_RS03080 0.51 -4.0 762,706 + CA265_RS03080 0.60 +2.0 762,707 - CA265_RS03080 0.60 -1.1 762,803 + CA265_RS03080 0.70 -0.1 762,806 + CA265_RS03080 0.70 -2.1 762,858 - CA265_RS03080 0.76 -0.8 762,892 + CA265_RS03080 0.79 -3.2 762,993 + +0.2 763,115 + +0.4 763,145 + -3.3 763,196 - +0.2 763,198 + +0.2 763,269 - -0.4 763,284 - CA265_RS03085 0.11 +0.8 763,290 + CA265_RS03085 0.12 -1.4 763,291 - CA265_RS03085 0.12 -0.9 763,341 - CA265_RS03085 0.23 -1.7 763,385 + CA265_RS03085 0.33 -0.0 763,388 + CA265_RS03085 0.34 +0.6 763,389 - CA265_RS03085 0.34 +0.8 763,389 - CA265_RS03085 0.34 +0.3 763,497 - CA265_RS03085 0.58 -0.1 763,535 + CA265_RS03085 0.66 -1.6 763,536 - CA265_RS03085 0.66 -0.2 763,540 - CA265_RS03085 0.67 +0.5 763,550 - CA265_RS03085 0.69 +1.8 763,569 + CA265_RS03085 0.74 +0.8 763,718 + -1.5 763,736 - -2.7 763,784 + -3.4 763,785 - -2.1 763,831 + -2.5 763,845 - +0.6 763,851 - -0.4 763,855 + +0.6 763,855 + -0.2 763,856 - -0.9 763,924 - -0.9 763,936 + +0.0 763,943 + -2.2 763,999 - +2.1 764,021 - +0.1 764,135 - -2.2 764,177 - -0.8 764,189 - -0.2
Or see this region's nucleotide sequence