Experiment: Lactulose 20mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS03060 and CA265_RS03065 are separated by 238 nucleotides CA265_RS03065 and CA265_RS03070 are separated by 64 nucleotides CA265_RS03070 and CA265_RS03075 are separated by 9 nucleotides CA265_RS03075 and CA265_RS03080 are separated by 172 nucleotides
CA265_RS03060: CA265_RS03060 - DNA-binding response regulator, at 759,627 to 760,304
_RS03060
CA265_RS03065: CA265_RS03065 - hypothetical protein, at 760,543 to 761,079
_RS03065
CA265_RS03070: CA265_RS03070 - sec-independent protein translocase TatC, at 761,144 to 761,539
_RS03070
CA265_RS03075: CA265_RS03075 - hypothetical protein, at 761,549 to 761,974
_RS03075
CA265_RS03080: CA265_RS03080 - malate dehydrogenase, at 762,147 to 763,085
_RS03080
Position (kb) 761
762 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 760.203 kb on + strand, within CA265_RS03060 at 760.219 kb on - strand, within CA265_RS03060 at 760.220 kb on + strand, within CA265_RS03060 at 760.266 kb on + strand at 760.267 kb on - strand at 760.287 kb on + strand at 760.296 kb on + strand at 760.296 kb on + strand at 760.317 kb on - strand at 760.419 kb on - strand at 760.453 kb on - strand at 760.473 kb on - strand at 760.473 kb on - strand at 760.477 kb on + strand at 760.478 kb on - strand at 760.525 kb on + strand at 760.641 kb on + strand, within CA265_RS03065 at 760.765 kb on + strand, within CA265_RS03065 at 760.777 kb on - strand, within CA265_RS03065 at 760.783 kb on + strand, within CA265_RS03065 at 760.839 kb on + strand, within CA265_RS03065 at 760.840 kb on - strand, within CA265_RS03065 at 760.878 kb on + strand, within CA265_RS03065 at 760.993 kb on - strand, within CA265_RS03065 at 761.001 kb on + strand, within CA265_RS03065 at 761.020 kb on + strand, within CA265_RS03065 at 761.021 kb on - strand, within CA265_RS03065 at 761.099 kb on + strand at 761.236 kb on + strand, within CA265_RS03070 at 761.236 kb on + strand, within CA265_RS03070 at 761.324 kb on + strand, within CA265_RS03070 at 761.357 kb on - strand, within CA265_RS03070 at 761.359 kb on - strand, within CA265_RS03070 at 761.427 kb on - strand, within CA265_RS03070 at 761.447 kb on + strand, within CA265_RS03070 at 761.458 kb on + strand, within CA265_RS03070 at 761.468 kb on - strand, within CA265_RS03070 at 761.492 kb on - strand, within CA265_RS03070 at 761.492 kb on - strand, within CA265_RS03070 at 761.509 kb on + strand at 761.510 kb on - strand at 761.547 kb on + strand at 761.547 kb on + strand at 761.548 kb on - strand at 761.608 kb on + strand, within CA265_RS03075 at 761.609 kb on + strand, within CA265_RS03075 at 761.610 kb on - strand, within CA265_RS03075 at 761.610 kb on - strand, within CA265_RS03075 at 761.610 kb on - strand, within CA265_RS03075 at 761.626 kb on + strand, within CA265_RS03075 at 761.626 kb on + strand, within CA265_RS03075 at 761.631 kb on - strand, within CA265_RS03075 at 761.632 kb on + strand, within CA265_RS03075 at 761.632 kb on + strand, within CA265_RS03075 at 761.632 kb on + strand, within CA265_RS03075 at 761.633 kb on - strand, within CA265_RS03075 at 761.785 kb on + strand, within CA265_RS03075 at 761.805 kb on - strand, within CA265_RS03075 at 761.839 kb on + strand, within CA265_RS03075 at 761.851 kb on + strand, within CA265_RS03075 at 761.866 kb on + strand, within CA265_RS03075 at 761.866 kb on + strand, within CA265_RS03075 at 761.979 kb on + strand at 761.979 kb on + strand at 762.023 kb on - strand at 762.048 kb on + strand at 762.057 kb on - strand at 762.067 kb on + strand at 762.067 kb on + strand at 762.068 kb on - strand at 762.068 kb on - strand at 762.068 kb on - strand at 762.093 kb on - strand at 762.137 kb on + strand at 762.137 kb on + strand at 762.182 kb on + strand at 762.275 kb on + strand, within CA265_RS03080 at 762.286 kb on - strand, within CA265_RS03080 at 762.291 kb on + strand, within CA265_RS03080 at 762.300 kb on - strand, within CA265_RS03080 at 762.426 kb on + strand, within CA265_RS03080 at 762.458 kb on + strand, within CA265_RS03080 at 762.483 kb on - strand, within CA265_RS03080 at 762.501 kb on - strand, within CA265_RS03080 at 762.520 kb on + strand, within CA265_RS03080
Per-strain Table
Position Strand Gene LocusTag Fraction Lactulose 20mM (C) remove 760,203 + CA265_RS03060 0.85 -1.7 760,219 - CA265_RS03060 0.87 +0.1 760,220 + CA265_RS03060 0.87 -0.5 760,266 + +0.0 760,267 - +0.1 760,287 + -3.1 760,296 + +0.1 760,296 + -0.5 760,317 - +0.1 760,419 - -0.1 760,453 - -0.8 760,473 - -0.3 760,473 - -1.5 760,477 + +0.9 760,478 - +3.1 760,525 + -0.2 760,641 + CA265_RS03065 0.18 +0.1 760,765 + CA265_RS03065 0.41 +2.9 760,777 - CA265_RS03065 0.44 +0.6 760,783 + CA265_RS03065 0.45 -3.4 760,839 + CA265_RS03065 0.55 -3.5 760,840 - CA265_RS03065 0.55 -0.8 760,878 + CA265_RS03065 0.62 +1.6 760,993 - CA265_RS03065 0.84 +3.7 761,001 + CA265_RS03065 0.85 +0.7 761,020 + CA265_RS03065 0.89 +1.3 761,021 - CA265_RS03065 0.89 +2.3 761,099 + +1.2 761,236 + CA265_RS03070 0.23 +0.3 761,236 + CA265_RS03070 0.23 +0.3 761,324 + CA265_RS03070 0.45 -4.4 761,357 - CA265_RS03070 0.54 -0.5 761,359 - CA265_RS03070 0.54 +0.1 761,427 - CA265_RS03070 0.71 -0.9 761,447 + CA265_RS03070 0.77 +1.5 761,458 + CA265_RS03070 0.79 -0.6 761,468 - CA265_RS03070 0.82 +2.8 761,492 - CA265_RS03070 0.88 -2.3 761,492 - CA265_RS03070 0.88 -0.4 761,509 + -3.4 761,510 - -0.5 761,547 + +1.6 761,547 + +0.2 761,548 - +0.5 761,608 + CA265_RS03075 0.14 -1.7 761,609 + CA265_RS03075 0.14 +0.8 761,610 - CA265_RS03075 0.14 -1.6 761,610 - CA265_RS03075 0.14 -0.7 761,610 - CA265_RS03075 0.14 -1.5 761,626 + CA265_RS03075 0.18 +1.3 761,626 + CA265_RS03075 0.18 -2.0 761,631 - CA265_RS03075 0.19 -0.8 761,632 + CA265_RS03075 0.19 -0.7 761,632 + CA265_RS03075 0.19 -0.1 761,632 + CA265_RS03075 0.19 +0.0 761,633 - CA265_RS03075 0.20 +0.8 761,785 + CA265_RS03075 0.55 +1.3 761,805 - CA265_RS03075 0.60 +0.3 761,839 + CA265_RS03075 0.68 -3.1 761,851 + CA265_RS03075 0.71 -2.7 761,866 + CA265_RS03075 0.74 -0.2 761,866 + CA265_RS03075 0.74 -3.0 761,979 + +0.1 761,979 + -2.4 762,023 - -2.1 762,048 + -0.2 762,057 - +0.7 762,067 + -0.5 762,067 + -2.6 762,068 - +0.1 762,068 - -0.8 762,068 - -0.4 762,093 - +0.9 762,137 + -3.8 762,137 + -0.2 762,182 + +0.8 762,275 + CA265_RS03080 0.14 +0.6 762,286 - CA265_RS03080 0.15 -3.3 762,291 + CA265_RS03080 0.15 +0.2 762,300 - CA265_RS03080 0.16 -2.2 762,426 + CA265_RS03080 0.30 -0.2 762,458 + CA265_RS03080 0.33 -0.2 762,483 - CA265_RS03080 0.36 -3.1 762,501 - CA265_RS03080 0.38 -4.5 762,520 + CA265_RS03080 0.40 +0.6
Or see this region's nucleotide sequence