Experiment: Lactulose 20mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS03055 and CA265_RS03060 overlap by 1 nucleotides CA265_RS03060 and CA265_RS03065 are separated by 238 nucleotides CA265_RS03065 and CA265_RS03070 are separated by 64 nucleotides
CA265_RS03055: CA265_RS03055 - two-component sensor histidine kinase, at 758,275 to 759,627
_RS03055
CA265_RS03060: CA265_RS03060 - DNA-binding response regulator, at 759,627 to 760,304
_RS03060
CA265_RS03065: CA265_RS03065 - hypothetical protein, at 760,543 to 761,079
_RS03065
CA265_RS03070: CA265_RS03070 - sec-independent protein translocase TatC, at 761,144 to 761,539
_RS03070
Position (kb) 759
760
761 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 758.646 kb on + strand, within CA265_RS03055 at 758.647 kb on - strand, within CA265_RS03055 at 758.697 kb on + strand, within CA265_RS03055 at 758.725 kb on + strand, within CA265_RS03055 at 758.725 kb on + strand, within CA265_RS03055 at 758.793 kb on + strand, within CA265_RS03055 at 758.794 kb on - strand, within CA265_RS03055 at 758.800 kb on + strand, within CA265_RS03055 at 758.800 kb on + strand, within CA265_RS03055 at 758.896 kb on - strand, within CA265_RS03055 at 758.914 kb on + strand, within CA265_RS03055 at 758.914 kb on + strand, within CA265_RS03055 at 758.915 kb on - strand, within CA265_RS03055 at 758.937 kb on + strand, within CA265_RS03055 at 759.037 kb on + strand, within CA265_RS03055 at 759.038 kb on - strand, within CA265_RS03055 at 759.072 kb on + strand, within CA265_RS03055 at 759.085 kb on + strand, within CA265_RS03055 at 759.103 kb on + strand, within CA265_RS03055 at 759.111 kb on - strand, within CA265_RS03055 at 759.115 kb on - strand, within CA265_RS03055 at 759.143 kb on - strand, within CA265_RS03055 at 759.238 kb on - strand, within CA265_RS03055 at 759.304 kb on + strand, within CA265_RS03055 at 759.382 kb on + strand, within CA265_RS03055 at 759.383 kb on - strand, within CA265_RS03055 at 759.383 kb on - strand, within CA265_RS03055 at 759.390 kb on - strand, within CA265_RS03055 at 759.440 kb on + strand, within CA265_RS03055 at 759.440 kb on + strand, within CA265_RS03055 at 759.441 kb on - strand, within CA265_RS03055 at 759.447 kb on + strand, within CA265_RS03055 at 759.486 kb on + strand, within CA265_RS03055 at 759.490 kb on - strand, within CA265_RS03055 at 759.576 kb on + strand at 759.577 kb on - strand at 759.577 kb on - strand at 759.644 kb on + strand at 759.712 kb on + strand, within CA265_RS03060 at 759.712 kb on + strand, within CA265_RS03060 at 759.820 kb on + strand, within CA265_RS03060 at 759.821 kb on - strand, within CA265_RS03060 at 760.008 kb on + strand, within CA265_RS03060 at 760.059 kb on - strand, within CA265_RS03060 at 760.076 kb on + strand, within CA265_RS03060 at 760.077 kb on - strand, within CA265_RS03060 at 760.079 kb on + strand, within CA265_RS03060 at 760.080 kb on - strand, within CA265_RS03060 at 760.080 kb on - strand, within CA265_RS03060 at 760.080 kb on - strand, within CA265_RS03060 at 760.082 kb on + strand, within CA265_RS03060 at 760.082 kb on + strand, within CA265_RS03060 at 760.083 kb on - strand, within CA265_RS03060 at 760.107 kb on - strand, within CA265_RS03060 at 760.143 kb on + strand, within CA265_RS03060 at 760.203 kb on + strand, within CA265_RS03060 at 760.219 kb on - strand, within CA265_RS03060 at 760.220 kb on + strand, within CA265_RS03060 at 760.266 kb on + strand at 760.267 kb on - strand at 760.287 kb on + strand at 760.296 kb on + strand at 760.296 kb on + strand at 760.317 kb on - strand at 760.419 kb on - strand at 760.453 kb on - strand at 760.473 kb on - strand at 760.473 kb on - strand at 760.477 kb on + strand at 760.478 kb on - strand at 760.525 kb on + strand at 760.641 kb on + strand, within CA265_RS03065 at 760.765 kb on + strand, within CA265_RS03065 at 760.777 kb on - strand, within CA265_RS03065 at 760.783 kb on + strand, within CA265_RS03065 at 760.839 kb on + strand, within CA265_RS03065 at 760.840 kb on - strand, within CA265_RS03065 at 760.878 kb on + strand, within CA265_RS03065 at 760.993 kb on - strand, within CA265_RS03065 at 761.001 kb on + strand, within CA265_RS03065 at 761.020 kb on + strand, within CA265_RS03065 at 761.021 kb on - strand, within CA265_RS03065 at 761.099 kb on + strand at 761.236 kb on + strand, within CA265_RS03070 at 761.236 kb on + strand, within CA265_RS03070
Per-strain Table
Position Strand Gene LocusTag Fraction Lactulose 20mM (C) remove 758,646 + CA265_RS03055 0.27 -3.3 758,647 - CA265_RS03055 0.27 -2.4 758,697 + CA265_RS03055 0.31 -1.7 758,725 + CA265_RS03055 0.33 -3.5 758,725 + CA265_RS03055 0.33 -1.5 758,793 + CA265_RS03055 0.38 -1.0 758,794 - CA265_RS03055 0.38 -0.6 758,800 + CA265_RS03055 0.39 +0.5 758,800 + CA265_RS03055 0.39 -0.3 758,896 - CA265_RS03055 0.46 +0.8 758,914 + CA265_RS03055 0.47 +0.9 758,914 + CA265_RS03055 0.47 +0.4 758,915 - CA265_RS03055 0.47 +0.5 758,937 + CA265_RS03055 0.49 -0.6 759,037 + CA265_RS03055 0.56 -4.5 759,038 - CA265_RS03055 0.56 -3.2 759,072 + CA265_RS03055 0.59 +0.1 759,085 + CA265_RS03055 0.60 +1.0 759,103 + CA265_RS03055 0.61 +0.3 759,111 - CA265_RS03055 0.62 -1.2 759,115 - CA265_RS03055 0.62 -0.2 759,143 - CA265_RS03055 0.64 +1.9 759,238 - CA265_RS03055 0.71 -0.5 759,304 + CA265_RS03055 0.76 -3.2 759,382 + CA265_RS03055 0.82 +0.6 759,383 - CA265_RS03055 0.82 +1.7 759,383 - CA265_RS03055 0.82 +1.2 759,390 - CA265_RS03055 0.82 +0.6 759,440 + CA265_RS03055 0.86 -4.7 759,440 + CA265_RS03055 0.86 -1.0 759,441 - CA265_RS03055 0.86 +1.4 759,447 + CA265_RS03055 0.87 +1.3 759,486 + CA265_RS03055 0.90 -0.2 759,490 - CA265_RS03055 0.90 +1.2 759,576 + -0.3 759,577 - -0.4 759,577 - +0.3 759,644 + +0.8 759,712 + CA265_RS03060 0.13 +1.2 759,712 + CA265_RS03060 0.13 +2.7 759,820 + CA265_RS03060 0.28 -1.6 759,821 - CA265_RS03060 0.29 -2.1 760,008 + CA265_RS03060 0.56 +2.8 760,059 - CA265_RS03060 0.64 -3.8 760,076 + CA265_RS03060 0.66 -0.6 760,077 - CA265_RS03060 0.66 -0.6 760,079 + CA265_RS03060 0.67 +0.2 760,080 - CA265_RS03060 0.67 -1.4 760,080 - CA265_RS03060 0.67 +0.7 760,080 - CA265_RS03060 0.67 -3.1 760,082 + CA265_RS03060 0.67 -2.9 760,082 + CA265_RS03060 0.67 +0.8 760,083 - CA265_RS03060 0.67 +1.2 760,107 - CA265_RS03060 0.71 +1.0 760,143 + CA265_RS03060 0.76 -2.1 760,203 + CA265_RS03060 0.85 -1.7 760,219 - CA265_RS03060 0.87 +0.1 760,220 + CA265_RS03060 0.87 -0.5 760,266 + +0.0 760,267 - +0.1 760,287 + -3.1 760,296 + +0.1 760,296 + -0.5 760,317 - +0.1 760,419 - -0.1 760,453 - -0.8 760,473 - -0.3 760,473 - -1.5 760,477 + +0.9 760,478 - +3.1 760,525 + -0.2 760,641 + CA265_RS03065 0.18 +0.1 760,765 + CA265_RS03065 0.41 +2.9 760,777 - CA265_RS03065 0.44 +0.6 760,783 + CA265_RS03065 0.45 -3.4 760,839 + CA265_RS03065 0.55 -3.5 760,840 - CA265_RS03065 0.55 -0.8 760,878 + CA265_RS03065 0.62 +1.6 760,993 - CA265_RS03065 0.84 +3.7 761,001 + CA265_RS03065 0.85 +0.7 761,020 + CA265_RS03065 0.89 +1.3 761,021 - CA265_RS03065 0.89 +2.3 761,099 + +1.2 761,236 + CA265_RS03070 0.23 +0.3 761,236 + CA265_RS03070 0.23 +0.3
Or see this region's nucleotide sequence