Experiment: Lactulose 20mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS03030 and CA265_RS03035 are separated by 142 nucleotides CA265_RS03035 and CA265_RS03040 are separated by 0 nucleotides CA265_RS03040 and CA265_RS03045 are separated by 139 nucleotides
CA265_RS03030: CA265_RS03030 - DNA topoisomerase (ATP-hydrolyzing) subunit B, at 753,356 to 755,314
_RS03030
CA265_RS03035: CA265_RS03035 - PadR family transcriptional regulator, at 755,457 to 755,795
_RS03035
CA265_RS03040: CA265_RS03040 - hypothetical protein, at 755,796 to 756,485
_RS03040
CA265_RS03045: CA265_RS03045 - hypothetical protein, at 756,625 to 757,551
_RS03045
Position (kb) 755
756 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 755.313 kb on - strand at 755.313 kb on - strand at 755.340 kb on - strand at 755.445 kb on + strand at 755.477 kb on - strand at 755.535 kb on + strand, within CA265_RS03035 at 755.585 kb on - strand, within CA265_RS03035 at 755.591 kb on - strand, within CA265_RS03035 at 755.605 kb on + strand, within CA265_RS03035 at 755.606 kb on - strand, within CA265_RS03035 at 755.606 kb on - strand, within CA265_RS03035 at 755.654 kb on + strand, within CA265_RS03035 at 755.689 kb on - strand, within CA265_RS03035 at 755.699 kb on + strand, within CA265_RS03035 at 755.723 kb on - strand, within CA265_RS03035 at 755.726 kb on + strand, within CA265_RS03035 at 755.726 kb on + strand, within CA265_RS03035 at 755.869 kb on + strand, within CA265_RS03040 at 755.869 kb on + strand, within CA265_RS03040 at 755.870 kb on - strand, within CA265_RS03040 at 755.893 kb on + strand, within CA265_RS03040 at 755.893 kb on + strand, within CA265_RS03040 at 755.894 kb on - strand, within CA265_RS03040 at 755.937 kb on - strand, within CA265_RS03040 at 755.937 kb on - strand, within CA265_RS03040 at 756.033 kb on + strand, within CA265_RS03040 at 756.033 kb on + strand at 756.078 kb on - strand, within CA265_RS03040 at 756.078 kb on - strand, within CA265_RS03040 at 756.081 kb on + strand, within CA265_RS03040 at 756.081 kb on + strand, within CA265_RS03040 at 756.081 kb on + strand, within CA265_RS03040 at 756.089 kb on - strand, within CA265_RS03040 at 756.117 kb on + strand, within CA265_RS03040 at 756.137 kb on + strand, within CA265_RS03040 at 756.138 kb on - strand, within CA265_RS03040 at 756.138 kb on - strand, within CA265_RS03040 at 756.153 kb on + strand, within CA265_RS03040 at 756.182 kb on - strand, within CA265_RS03040 at 756.231 kb on + strand, within CA265_RS03040 at 756.273 kb on - strand, within CA265_RS03040 at 756.350 kb on + strand, within CA265_RS03040 at 756.350 kb on + strand, within CA265_RS03040 at 756.364 kb on + strand, within CA265_RS03040 at 756.400 kb on - strand, within CA265_RS03040 at 756.404 kb on + strand, within CA265_RS03040 at 756.413 kb on + strand, within CA265_RS03040 at 756.413 kb on + strand, within CA265_RS03040 at 756.416 kb on + strand, within CA265_RS03040 at 756.446 kb on + strand at 756.478 kb on - strand at 756.478 kb on - strand at 756.478 kb on - strand at 756.478 kb on - strand at 756.490 kb on - strand at 756.530 kb on + strand at 756.532 kb on + strand at 756.683 kb on - strand at 756.688 kb on - strand at 756.724 kb on - strand, within CA265_RS03045 at 756.756 kb on + strand, within CA265_RS03045
Per-strain Table
Position Strand Gene LocusTag Fraction Lactulose 20mM (C) remove 755,313 - +1.6 755,313 - -0.6 755,340 - +0.7 755,445 + +0.4 755,477 - -2.4 755,535 + CA265_RS03035 0.23 +0.2 755,585 - CA265_RS03035 0.38 -0.3 755,591 - CA265_RS03035 0.40 +1.3 755,605 + CA265_RS03035 0.44 -0.8 755,606 - CA265_RS03035 0.44 -0.1 755,606 - CA265_RS03035 0.44 -1.4 755,654 + CA265_RS03035 0.58 -3.8 755,689 - CA265_RS03035 0.68 -2.4 755,699 + CA265_RS03035 0.71 -0.2 755,723 - CA265_RS03035 0.78 -0.5 755,726 + CA265_RS03035 0.79 +0.3 755,726 + CA265_RS03035 0.79 -3.7 755,869 + CA265_RS03040 0.11 -0.3 755,869 + CA265_RS03040 0.11 +3.5 755,870 - CA265_RS03040 0.11 -0.2 755,893 + CA265_RS03040 0.14 -0.6 755,893 + CA265_RS03040 0.14 +0.1 755,894 - CA265_RS03040 0.14 +1.6 755,937 - CA265_RS03040 0.20 -1.4 755,937 - CA265_RS03040 0.20 -1.1 756,033 + CA265_RS03040 0.34 +1.1 756,033 + +0.3 756,078 - CA265_RS03040 0.41 -1.5 756,078 - CA265_RS03040 0.41 +0.1 756,081 + CA265_RS03040 0.41 -5.0 756,081 + CA265_RS03040 0.41 +1.5 756,081 + CA265_RS03040 0.41 -3.0 756,089 - CA265_RS03040 0.42 -0.6 756,117 + CA265_RS03040 0.47 +1.0 756,137 + CA265_RS03040 0.49 -0.4 756,138 - CA265_RS03040 0.50 -0.0 756,138 - CA265_RS03040 0.50 -3.9 756,153 + CA265_RS03040 0.52 +1.7 756,182 - CA265_RS03040 0.56 +0.2 756,231 + CA265_RS03040 0.63 +0.6 756,273 - CA265_RS03040 0.69 -0.1 756,350 + CA265_RS03040 0.80 +1.0 756,350 + CA265_RS03040 0.80 +1.9 756,364 + CA265_RS03040 0.82 +0.7 756,400 - CA265_RS03040 0.88 +1.3 756,404 + CA265_RS03040 0.88 +1.5 756,413 + CA265_RS03040 0.89 +0.6 756,413 + CA265_RS03040 0.89 -1.4 756,416 + CA265_RS03040 0.90 -2.3 756,446 + -4.3 756,478 - +0.0 756,478 - -2.6 756,478 - -1.3 756,478 - -0.1 756,490 - +2.1 756,530 + +0.4 756,532 + +1.0 756,683 - +0.0 756,688 - +1.7 756,724 - CA265_RS03045 0.11 +1.3 756,756 + CA265_RS03045 0.14 -0.2
Or see this region's nucleotide sequence