Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS32520

Experiment: Sisomicin 0.01 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS32515 and AZOBR_RS32520 overlap by 11 nucleotidesAZOBR_RS32520 and AZOBR_RS32525 are separated by 179 nucleotidesAZOBR_RS32525 and AZOBR_RS32530 are separated by 444 nucleotides AZOBR_RS32515: AZOBR_RS32515 - chromosome partitioning protein, at 660,755 to 661,612 _RS32515 AZOBR_RS32520: AZOBR_RS32520 - chromosome partitioning protein, at 661,602 to 662,624 _RS32520 AZOBR_RS32525: AZOBR_RS32525 - hypothetical protein, at 662,804 to 663,028 _RS32525 AZOBR_RS32530: AZOBR_RS32530 - hypothetical protein, at 663,473 to 664,573 _RS32530 Position (kb) 661 662 663Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 662.752 kb on + strandat 662.752 kb on + strandat 662.753 kb on - strandat 663.073 kb on + strandat 663.107 kb on - strandat 663.114 kb on - strandat 663.114 kb on - strandat 663.149 kb on - strandat 663.208 kb on + strandat 663.209 kb on - strandat 663.236 kb on + strandat 663.473 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Sisomicin 0.01 mg/ml
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662,752 + +0.2
662,752 + -1.3
662,753 - +0.2
663,073 + -3.8
663,107 - -0.0
663,114 - -0.1
663,114 - +0.5
663,149 - +0.3
663,208 + -0.3
663,209 - -1.2
663,236 + -1.0
663,473 - -4.1

Or see this region's nucleotide sequence