Experiment: Sisomicin 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS31945 and AZOBR_RS31950 are separated by 41 nucleotides AZOBR_RS31950 and AZOBR_RS31955 are separated by 340 nucleotides
AZOBR_RS31945: AZOBR_RS31945 - oxalyl-CoA decarboxylase, at 533,168 to 534,925
_RS31945
AZOBR_RS31950: AZOBR_RS31950 - GntR family transcriptional regulator, at 534,967 to 535,656
_RS31950
AZOBR_RS31955: AZOBR_RS31955 - lipid kinase, at 535,997 to 536,881
_RS31955
Position (kb) 534
535
536 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 534.397 kb on - strand, within AZOBR_RS31945 at 534.531 kb on + strand, within AZOBR_RS31945 at 534.531 kb on + strand, within AZOBR_RS31945 at 534.531 kb on + strand, within AZOBR_RS31945 at 534.532 kb on - strand, within AZOBR_RS31945 at 534.804 kb on + strand at 534.804 kb on + strand at 534.804 kb on + strand at 534.804 kb on + strand at 534.804 kb on + strand at 534.804 kb on + strand at 534.805 kb on - strand at 534.805 kb on - strand at 534.925 kb on + strand at 534.925 kb on + strand at 534.925 kb on + strand at 534.925 kb on + strand at 534.925 kb on + strand at 534.926 kb on - strand at 534.932 kb on + strand at 534.933 kb on - strand at 534.933 kb on - strand at 534.949 kb on + strand at 534.950 kb on - strand at 535.553 kb on + strand, within AZOBR_RS31950 at 535.553 kb on + strand, within AZOBR_RS31950 at 535.554 kb on - strand, within AZOBR_RS31950 at 535.554 kb on - strand, within AZOBR_RS31950 at 535.554 kb on - strand, within AZOBR_RS31950 at 535.554 kb on - strand, within AZOBR_RS31950 at 535.593 kb on - strand at 535.593 kb on - strand at 536.012 kb on + strand at 536.012 kb on + strand at 536.012 kb on + strand at 536.013 kb on - strand at 536.013 kb on - strand at 536.223 kb on + strand, within AZOBR_RS31955 at 536.224 kb on - strand, within AZOBR_RS31955
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.01 mg/ml remove 534,397 - AZOBR_RS31945 0.70 -0.1 534,531 + AZOBR_RS31945 0.78 +0.9 534,531 + AZOBR_RS31945 0.78 +1.2 534,531 + AZOBR_RS31945 0.78 +0.1 534,532 - AZOBR_RS31945 0.78 -1.7 534,804 + +1.0 534,804 + -1.0 534,804 + -1.5 534,804 + +0.7 534,804 + +0.6 534,804 + -0.5 534,805 - -0.0 534,805 - -1.9 534,925 + +1.3 534,925 + +1.4 534,925 + +2.1 534,925 + -0.1 534,925 + -0.2 534,926 - -3.3 534,932 + -0.6 534,933 - +1.8 534,933 - -1.6 534,949 + +1.4 534,950 - +0.2 535,553 + AZOBR_RS31950 0.85 -0.4 535,553 + AZOBR_RS31950 0.85 -2.1 535,554 - AZOBR_RS31950 0.85 +0.8 535,554 - AZOBR_RS31950 0.85 +0.4 535,554 - AZOBR_RS31950 0.85 +1.5 535,554 - AZOBR_RS31950 0.85 +1.7 535,593 - -0.8 535,593 - +0.6 536,012 + -1.8 536,012 + +0.4 536,012 + +2.1 536,013 - +0.2 536,013 - -3.7 536,223 + AZOBR_RS31955 0.26 -0.7 536,224 - AZOBR_RS31955 0.26 -2.7
Or see this region's nucleotide sequence