Experiment: Sisomicin 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS31460 and AZOBR_RS31465 are separated by 110 nucleotides AZOBR_RS31465 and AZOBR_RS31470 are separated by 13 nucleotides AZOBR_RS31470 and AZOBR_RS31475 are separated by 38 nucleotides
AZOBR_RS31460: AZOBR_RS31460 - tripartite tricarboxylate transporter TctA, at 425,406 to 426,878
_RS31460
AZOBR_RS31465: AZOBR_RS31465 - membrane protein, at 426,989 to 427,657
_RS31465
AZOBR_RS31470: AZOBR_RS31470 - universal stress protein UspA, at 427,671 to 428,549
_RS31470
AZOBR_RS31475: AZOBR_RS31475 - chemotaxis protein CheY, at 428,588 to 429,262
_RS31475
Position (kb) 426
427
428 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 426.066 kb on + strand, within AZOBR_RS31460 at 426.066 kb on + strand, within AZOBR_RS31460 at 426.066 kb on + strand, within AZOBR_RS31460 at 426.066 kb on + strand, within AZOBR_RS31460 at 426.067 kb on - strand, within AZOBR_RS31460 at 426.243 kb on + strand, within AZOBR_RS31460 at 426.243 kb on + strand, within AZOBR_RS31460 at 426.243 kb on + strand, within AZOBR_RS31460 at 426.244 kb on - strand, within AZOBR_RS31460 at 426.495 kb on + strand, within AZOBR_RS31460 at 426.583 kb on - strand, within AZOBR_RS31460 at 426.618 kb on + strand, within AZOBR_RS31460 at 426.948 kb on + strand at 426.948 kb on + strand at 426.949 kb on - strand at 426.949 kb on - strand at 426.949 kb on - strand at 426.949 kb on - strand at 427.589 kb on + strand, within AZOBR_RS31465 at 427.589 kb on + strand, within AZOBR_RS31465 at 427.589 kb on + strand, within AZOBR_RS31465 at 427.589 kb on + strand, within AZOBR_RS31465 at 427.590 kb on - strand, within AZOBR_RS31465 at 427.590 kb on - strand, within AZOBR_RS31465 at 427.590 kb on - strand, within AZOBR_RS31465 at 427.590 kb on - strand, within AZOBR_RS31465 at 427.590 kb on - strand, within AZOBR_RS31465 at 428.331 kb on + strand, within AZOBR_RS31470 at 428.331 kb on + strand, within AZOBR_RS31470 at 428.332 kb on - strand, within AZOBR_RS31470 at 428.332 kb on - strand, within AZOBR_RS31470 at 428.332 kb on - strand, within AZOBR_RS31470 at 428.455 kb on - strand, within AZOBR_RS31470 at 428.559 kb on + strand at 428.560 kb on - strand at 428.560 kb on - strand at 428.560 kb on - strand at 428.560 kb on - strand at 428.595 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.01 mg/ml remove 426,066 + AZOBR_RS31460 0.45 -3.7 426,066 + AZOBR_RS31460 0.45 -1.5 426,066 + AZOBR_RS31460 0.45 +1.0 426,066 + AZOBR_RS31460 0.45 -3.6 426,067 - AZOBR_RS31460 0.45 -1.2 426,243 + AZOBR_RS31460 0.57 +0.5 426,243 + AZOBR_RS31460 0.57 -0.2 426,243 + AZOBR_RS31460 0.57 +0.9 426,244 - AZOBR_RS31460 0.57 +1.7 426,495 + AZOBR_RS31460 0.74 +0.2 426,583 - AZOBR_RS31460 0.80 +0.3 426,618 + AZOBR_RS31460 0.82 -0.8 426,948 + -2.3 426,948 + +0.8 426,949 - +0.9 426,949 - +1.0 426,949 - +0.4 426,949 - +0.1 427,589 + AZOBR_RS31465 0.90 -0.2 427,589 + AZOBR_RS31465 0.90 -0.8 427,589 + AZOBR_RS31465 0.90 +2.4 427,589 + AZOBR_RS31465 0.90 +1.1 427,590 - AZOBR_RS31465 0.90 -4.9 427,590 - AZOBR_RS31465 0.90 +0.7 427,590 - AZOBR_RS31465 0.90 +0.9 427,590 - AZOBR_RS31465 0.90 -0.4 427,590 - AZOBR_RS31465 0.90 +0.3 428,331 + AZOBR_RS31470 0.75 +2.4 428,331 + AZOBR_RS31470 0.75 +1.1 428,332 - AZOBR_RS31470 0.75 +0.6 428,332 - AZOBR_RS31470 0.75 +0.8 428,332 - AZOBR_RS31470 0.75 -3.0 428,455 - AZOBR_RS31470 0.89 +0.6 428,559 + -3.2 428,560 - -1.9 428,560 - -2.5 428,560 - +0.9 428,560 - -1.4 428,595 + +1.0
Or see this region's nucleotide sequence