Experiment: Sisomicin 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS31415 and AZOBR_RS31420 are separated by 285 nucleotides AZOBR_RS31420 and AZOBR_RS31425 are separated by 209 nucleotides AZOBR_RS31425 and AZOBR_RS31430 are separated by 151 nucleotides
AZOBR_RS31415: AZOBR_RS31415 - GntR family transcriptional regulator, at 415,601 to 416,383
_RS31415
AZOBR_RS31420: AZOBR_RS31420 - methylglyoxal synthase, at 416,669 to 417,103
_RS31420
AZOBR_RS31425: AZOBR_RS31425 - glucuronate isomerase, at 417,313 to 418,716
_RS31425
AZOBR_RS31430: AZOBR_RS31430 - galactarate dehydratase, at 418,868 to 420,391
_RS31430
Position (kb) 417
418
419 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 416.507 kb on + strand at 416.509 kb on + strand at 416.509 kb on + strand at 416.509 kb on + strand at 416.510 kb on - strand at 416.510 kb on - strand at 416.510 kb on - strand at 416.513 kb on - strand at 416.513 kb on - strand at 416.513 kb on - strand at 416.513 kb on - strand at 416.610 kb on + strand at 416.619 kb on - strand at 416.981 kb on + strand, within AZOBR_RS31420 at 416.981 kb on + strand, within AZOBR_RS31420 at 416.982 kb on - strand, within AZOBR_RS31420 at 417.204 kb on - strand at 417.494 kb on - strand, within AZOBR_RS31425 at 417.511 kb on + strand, within AZOBR_RS31425 at 417.512 kb on - strand, within AZOBR_RS31425 at 417.512 kb on - strand, within AZOBR_RS31425 at 417.512 kb on - strand, within AZOBR_RS31425 at 417.512 kb on - strand, within AZOBR_RS31425 at 418.015 kb on + strand, within AZOBR_RS31425 at 418.309 kb on + strand, within AZOBR_RS31425 at 418.310 kb on - strand, within AZOBR_RS31425 at 418.705 kb on + strand at 418.706 kb on - strand at 418.706 kb on - strand at 418.706 kb on - strand at 418.820 kb on - strand at 419.039 kb on + strand, within AZOBR_RS31430 at 419.039 kb on + strand, within AZOBR_RS31430 at 419.040 kb on - strand, within AZOBR_RS31430 at 419.040 kb on - strand, within AZOBR_RS31430 at 419.040 kb on - strand, within AZOBR_RS31430 at 419.135 kb on + strand, within AZOBR_RS31430 at 419.240 kb on + strand, within AZOBR_RS31430 at 419.240 kb on + strand, within AZOBR_RS31430 at 419.241 kb on - strand, within AZOBR_RS31430 at 419.241 kb on - strand, within AZOBR_RS31430 at 419.366 kb on + strand, within AZOBR_RS31430 at 419.367 kb on - strand, within AZOBR_RS31430 at 419.367 kb on - strand, within AZOBR_RS31430 at 419.699 kb on + strand, within AZOBR_RS31430 at 419.700 kb on - strand, within AZOBR_RS31430
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.01 mg/ml remove 416,507 + +0.0 416,509 + -1.4 416,509 + -0.5 416,509 + -3.3 416,510 - +0.6 416,510 - +0.2 416,510 - +0.0 416,513 - +0.5 416,513 - +2.5 416,513 - -2.7 416,513 - -0.2 416,610 + +1.8 416,619 - +0.7 416,981 + AZOBR_RS31420 0.72 -0.1 416,981 + AZOBR_RS31420 0.72 +1.0 416,982 - AZOBR_RS31420 0.72 +0.4 417,204 - +2.7 417,494 - AZOBR_RS31425 0.13 +1.7 417,511 + AZOBR_RS31425 0.14 +0.0 417,512 - AZOBR_RS31425 0.14 +0.8 417,512 - AZOBR_RS31425 0.14 -1.7 417,512 - AZOBR_RS31425 0.14 -1.1 417,512 - AZOBR_RS31425 0.14 +1.4 418,015 + AZOBR_RS31425 0.50 +2.2 418,309 + AZOBR_RS31425 0.71 +0.5 418,310 - AZOBR_RS31425 0.71 +0.1 418,705 + +0.9 418,706 - -0.4 418,706 - +1.0 418,706 - -0.3 418,820 - +1.2 419,039 + AZOBR_RS31430 0.11 +1.0 419,039 + AZOBR_RS31430 0.11 -2.2 419,040 - AZOBR_RS31430 0.11 -1.2 419,040 - AZOBR_RS31430 0.11 +0.4 419,040 - AZOBR_RS31430 0.11 +0.6 419,135 + AZOBR_RS31430 0.18 -2.9 419,240 + AZOBR_RS31430 0.24 +0.3 419,240 + AZOBR_RS31430 0.24 +0.7 419,241 - AZOBR_RS31430 0.24 +0.2 419,241 - AZOBR_RS31430 0.24 +0.6 419,366 + AZOBR_RS31430 0.33 +0.4 419,367 - AZOBR_RS31430 0.33 -0.0 419,367 - AZOBR_RS31430 0.33 +0.7 419,699 + AZOBR_RS31430 0.55 +2.1 419,700 - AZOBR_RS31430 0.55 -0.3
Or see this region's nucleotide sequence