Experiment: Sisomicin 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS31410 and AZOBR_RS31415 are separated by 94 nucleotides AZOBR_RS31415 and AZOBR_RS31420 are separated by 285 nucleotides AZOBR_RS31420 and AZOBR_RS31425 are separated by 209 nucleotides
AZOBR_RS31410: AZOBR_RS31410 - aldo/keto reductase, at 414,445 to 415,506
_RS31410
AZOBR_RS31415: AZOBR_RS31415 - GntR family transcriptional regulator, at 415,601 to 416,383
_RS31415
AZOBR_RS31420: AZOBR_RS31420 - methylglyoxal synthase, at 416,669 to 417,103
_RS31420
AZOBR_RS31425: AZOBR_RS31425 - glucuronate isomerase, at 417,313 to 418,716
_RS31425
Position (kb) 415
416
417 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 414.803 kb on + strand, within AZOBR_RS31410 at 414.803 kb on + strand, within AZOBR_RS31410 at 414.804 kb on - strand, within AZOBR_RS31410 at 414.804 kb on - strand, within AZOBR_RS31410 at 414.804 kb on - strand, within AZOBR_RS31410 at 414.914 kb on + strand, within AZOBR_RS31410 at 414.993 kb on - strand, within AZOBR_RS31410 at 414.993 kb on - strand, within AZOBR_RS31410 at 415.010 kb on + strand, within AZOBR_RS31410 at 415.011 kb on - strand, within AZOBR_RS31410 at 415.011 kb on - strand, within AZOBR_RS31410 at 415.011 kb on - strand, within AZOBR_RS31410 at 415.011 kb on - strand, within AZOBR_RS31410 at 415.094 kb on + strand, within AZOBR_RS31410 at 415.109 kb on + strand, within AZOBR_RS31410 at 415.110 kb on - strand, within AZOBR_RS31410 at 415.110 kb on - strand, within AZOBR_RS31410 at 415.157 kb on + strand, within AZOBR_RS31410 at 415.157 kb on + strand, within AZOBR_RS31410 at 415.157 kb on + strand, within AZOBR_RS31410 at 415.157 kb on + strand, within AZOBR_RS31410 at 415.158 kb on - strand, within AZOBR_RS31410 at 415.158 kb on - strand, within AZOBR_RS31410 at 415.158 kb on - strand, within AZOBR_RS31410 at 415.158 kb on - strand, within AZOBR_RS31410 at 415.182 kb on - strand, within AZOBR_RS31410 at 415.182 kb on - strand, within AZOBR_RS31410 at 415.202 kb on + strand, within AZOBR_RS31410 at 415.203 kb on - strand, within AZOBR_RS31410 at 415.304 kb on + strand, within AZOBR_RS31410 at 415.304 kb on + strand, within AZOBR_RS31410 at 415.305 kb on - strand, within AZOBR_RS31410 at 415.305 kb on - strand, within AZOBR_RS31410 at 415.305 kb on - strand, within AZOBR_RS31410 at 415.305 kb on - strand, within AZOBR_RS31410 at 415.305 kb on - strand, within AZOBR_RS31410 at 415.457 kb on + strand at 415.494 kb on - strand at 415.557 kb on - strand at 415.687 kb on - strand, within AZOBR_RS31415 at 415.687 kb on - strand, within AZOBR_RS31415 at 415.687 kb on - strand, within AZOBR_RS31415 at 415.687 kb on - strand, within AZOBR_RS31415 at 416.178 kb on + strand, within AZOBR_RS31415 at 416.179 kb on - strand, within AZOBR_RS31415 at 416.259 kb on + strand, within AZOBR_RS31415 at 416.259 kb on + strand, within AZOBR_RS31415 at 416.507 kb on + strand at 416.509 kb on + strand at 416.509 kb on + strand at 416.509 kb on + strand at 416.510 kb on - strand at 416.510 kb on - strand at 416.510 kb on - strand at 416.513 kb on - strand at 416.513 kb on - strand at 416.513 kb on - strand at 416.513 kb on - strand at 416.610 kb on + strand at 416.619 kb on - strand at 416.981 kb on + strand, within AZOBR_RS31420 at 416.981 kb on + strand, within AZOBR_RS31420 at 416.982 kb on - strand, within AZOBR_RS31420 at 417.204 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.01 mg/ml remove 414,803 + AZOBR_RS31410 0.34 +0.9 414,803 + AZOBR_RS31410 0.34 -3.0 414,804 - AZOBR_RS31410 0.34 +1.2 414,804 - AZOBR_RS31410 0.34 +2.3 414,804 - AZOBR_RS31410 0.34 +0.8 414,914 + AZOBR_RS31410 0.44 -0.3 414,993 - AZOBR_RS31410 0.52 +1.0 414,993 - AZOBR_RS31410 0.52 -0.8 415,010 + AZOBR_RS31410 0.53 -1.9 415,011 - AZOBR_RS31410 0.53 +0.7 415,011 - AZOBR_RS31410 0.53 +0.3 415,011 - AZOBR_RS31410 0.53 -2.5 415,011 - AZOBR_RS31410 0.53 +0.2 415,094 + AZOBR_RS31410 0.61 +0.2 415,109 + AZOBR_RS31410 0.63 +0.6 415,110 - AZOBR_RS31410 0.63 +0.1 415,110 - AZOBR_RS31410 0.63 +0.8 415,157 + AZOBR_RS31410 0.67 -3.0 415,157 + AZOBR_RS31410 0.67 -3.7 415,157 + AZOBR_RS31410 0.67 +0.3 415,157 + AZOBR_RS31410 0.67 -3.1 415,158 - AZOBR_RS31410 0.67 -0.5 415,158 - AZOBR_RS31410 0.67 +1.3 415,158 - AZOBR_RS31410 0.67 -3.9 415,158 - AZOBR_RS31410 0.67 +1.2 415,182 - AZOBR_RS31410 0.69 -0.2 415,182 - AZOBR_RS31410 0.69 -4.5 415,202 + AZOBR_RS31410 0.71 +0.2 415,203 - AZOBR_RS31410 0.71 +1.0 415,304 + AZOBR_RS31410 0.81 +0.6 415,304 + AZOBR_RS31410 0.81 -2.3 415,305 - AZOBR_RS31410 0.81 -4.0 415,305 - AZOBR_RS31410 0.81 -3.1 415,305 - AZOBR_RS31410 0.81 +0.3 415,305 - AZOBR_RS31410 0.81 +1.9 415,305 - AZOBR_RS31410 0.81 -0.2 415,457 + -0.1 415,494 - +1.8 415,557 - -0.2 415,687 - AZOBR_RS31415 0.11 -3.8 415,687 - AZOBR_RS31415 0.11 -0.8 415,687 - AZOBR_RS31415 0.11 +0.3 415,687 - AZOBR_RS31415 0.11 -3.0 416,178 + AZOBR_RS31415 0.74 -1.4 416,179 - AZOBR_RS31415 0.74 -0.3 416,259 + AZOBR_RS31415 0.84 -0.5 416,259 + AZOBR_RS31415 0.84 -1.2 416,507 + +0.0 416,509 + -1.4 416,509 + -0.5 416,509 + -3.3 416,510 - +0.6 416,510 - +0.2 416,510 - +0.0 416,513 - +0.5 416,513 - +2.5 416,513 - -2.7 416,513 - -0.2 416,610 + +1.8 416,619 - +0.7 416,981 + AZOBR_RS31420 0.72 -0.1 416,981 + AZOBR_RS31420 0.72 +1.0 416,982 - AZOBR_RS31420 0.72 +0.4 417,204 - +2.7
Or see this region's nucleotide sequence