Experiment: Sisomicin 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS31270 and AZOBR_RS31275 are separated by 41 nucleotides AZOBR_RS31275 and AZOBR_RS31280 are separated by 306 nucleotides
AZOBR_RS31270: AZOBR_RS31270 - aldose 1-epimerase, at 381,579 to 382,652
_RS31270
AZOBR_RS31275: AZOBR_RS31275 - altronate oxidoreductase, at 382,694 to 384,199
_RS31275
AZOBR_RS31280: AZOBR_RS31280 - hypothetical protein, at 384,506 to 385,237
_RS31280
Position (kb) 382
383
384
385 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 381.694 kb on - strand, within AZOBR_RS31270 at 381.763 kb on - strand, within AZOBR_RS31270 at 381.822 kb on + strand, within AZOBR_RS31270 at 381.981 kb on + strand, within AZOBR_RS31270 at 381.981 kb on + strand, within AZOBR_RS31270 at 381.981 kb on + strand, within AZOBR_RS31270 at 381.982 kb on - strand, within AZOBR_RS31270 at 381.982 kb on - strand, within AZOBR_RS31270 at 381.982 kb on - strand, within AZOBR_RS31270 at 381.982 kb on - strand, within AZOBR_RS31270 at 382.335 kb on + strand, within AZOBR_RS31270 at 382.456 kb on - strand, within AZOBR_RS31270 at 382.456 kb on - strand, within AZOBR_RS31270 at 382.516 kb on - strand, within AZOBR_RS31270 at 382.516 kb on - strand, within AZOBR_RS31270 at 382.516 kb on - strand, within AZOBR_RS31270 at 382.573 kb on + strand at 382.573 kb on + strand at 382.573 kb on + strand at 382.614 kb on + strand at 382.615 kb on - strand at 382.931 kb on + strand, within AZOBR_RS31275 at 382.932 kb on - strand, within AZOBR_RS31275 at 382.932 kb on - strand, within AZOBR_RS31275 at 382.932 kb on - strand, within AZOBR_RS31275 at 383.120 kb on + strand, within AZOBR_RS31275 at 383.120 kb on + strand, within AZOBR_RS31275 at 383.120 kb on + strand, within AZOBR_RS31275 at 383.120 kb on + strand, within AZOBR_RS31275 at 383.121 kb on - strand, within AZOBR_RS31275 at 383.379 kb on - strand, within AZOBR_RS31275 at 383.420 kb on + strand, within AZOBR_RS31275 at 383.774 kb on + strand, within AZOBR_RS31275 at 383.774 kb on + strand, within AZOBR_RS31275 at 383.774 kb on + strand, within AZOBR_RS31275 at 383.775 kb on - strand, within AZOBR_RS31275 at 383.856 kb on - strand, within AZOBR_RS31275 at 383.856 kb on - strand, within AZOBR_RS31275 at 383.910 kb on + strand, within AZOBR_RS31275 at 383.911 kb on - strand, within AZOBR_RS31275 at 383.921 kb on + strand, within AZOBR_RS31275 at 383.922 kb on - strand, within AZOBR_RS31275 at 383.922 kb on - strand, within AZOBR_RS31275 at 383.922 kb on - strand, within AZOBR_RS31275 at 383.922 kb on - strand, within AZOBR_RS31275 at 383.922 kb on - strand, within AZOBR_RS31275 at 383.922 kb on - strand, within AZOBR_RS31275 at 384.207 kb on - strand at 384.207 kb on - strand at 384.226 kb on - strand at 384.288 kb on + strand at 384.358 kb on - strand at 384.360 kb on - strand at 384.361 kb on + strand at 384.564 kb on - strand at 384.564 kb on - strand at 384.564 kb on - strand at 384.564 kb on - strand at 384.647 kb on + strand, within AZOBR_RS31280 at 384.725 kb on + strand, within AZOBR_RS31280 at 384.725 kb on + strand, within AZOBR_RS31280 at 384.725 kb on + strand, within AZOBR_RS31280 at 384.995 kb on + strand, within AZOBR_RS31280 at 384.996 kb on - strand, within AZOBR_RS31280 at 384.996 kb on - strand, within AZOBR_RS31280 at 385.095 kb on - strand, within AZOBR_RS31280 at 385.095 kb on - strand, within AZOBR_RS31280
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.01 mg/ml remove 381,694 - AZOBR_RS31270 0.11 -0.9 381,763 - AZOBR_RS31270 0.17 +1.4 381,822 + AZOBR_RS31270 0.23 +1.1 381,981 + AZOBR_RS31270 0.37 +0.2 381,981 + AZOBR_RS31270 0.37 +0.9 381,981 + AZOBR_RS31270 0.37 -1.4 381,982 - AZOBR_RS31270 0.38 -2.2 381,982 - AZOBR_RS31270 0.38 +1.0 381,982 - AZOBR_RS31270 0.38 +0.4 381,982 - AZOBR_RS31270 0.38 +0.3 382,335 + AZOBR_RS31270 0.70 -0.5 382,456 - AZOBR_RS31270 0.82 +0.1 382,456 - AZOBR_RS31270 0.82 +0.5 382,516 - AZOBR_RS31270 0.87 -1.1 382,516 - AZOBR_RS31270 0.87 -3.0 382,516 - AZOBR_RS31270 0.87 -0.2 382,573 + -0.5 382,573 + +0.1 382,573 + +0.4 382,614 + -0.6 382,615 - -4.1 382,931 + AZOBR_RS31275 0.16 -2.5 382,932 - AZOBR_RS31275 0.16 -2.4 382,932 - AZOBR_RS31275 0.16 +0.5 382,932 - AZOBR_RS31275 0.16 -0.0 383,120 + AZOBR_RS31275 0.28 +0.3 383,120 + AZOBR_RS31275 0.28 -3.9 383,120 + AZOBR_RS31275 0.28 -0.5 383,120 + AZOBR_RS31275 0.28 +1.2 383,121 - AZOBR_RS31275 0.28 +0.2 383,379 - AZOBR_RS31275 0.45 -0.1 383,420 + AZOBR_RS31275 0.48 +1.7 383,774 + AZOBR_RS31275 0.72 +0.7 383,774 + AZOBR_RS31275 0.72 +0.7 383,774 + AZOBR_RS31275 0.72 +0.7 383,775 - AZOBR_RS31275 0.72 -0.6 383,856 - AZOBR_RS31275 0.77 -4.1 383,856 - AZOBR_RS31275 0.77 -0.3 383,910 + AZOBR_RS31275 0.81 +0.7 383,911 - AZOBR_RS31275 0.81 +0.5 383,921 + AZOBR_RS31275 0.81 +0.4 383,922 - AZOBR_RS31275 0.82 +1.1 383,922 - AZOBR_RS31275 0.82 +0.6 383,922 - AZOBR_RS31275 0.82 +0.6 383,922 - AZOBR_RS31275 0.82 -0.2 383,922 - AZOBR_RS31275 0.82 -0.6 383,922 - AZOBR_RS31275 0.82 +0.6 384,207 - -1.4 384,207 - +1.1 384,226 - -2.5 384,288 + +0.0 384,358 - -0.2 384,360 - -1.0 384,361 + +0.8 384,564 - +0.2 384,564 - -1.9 384,564 - -1.0 384,564 - +1.1 384,647 + AZOBR_RS31280 0.19 -2.2 384,725 + AZOBR_RS31280 0.30 +1.0 384,725 + AZOBR_RS31280 0.30 +1.5 384,725 + AZOBR_RS31280 0.30 +0.3 384,995 + AZOBR_RS31280 0.67 +0.1 384,996 - AZOBR_RS31280 0.67 +0.2 384,996 - AZOBR_RS31280 0.67 +0.0 385,095 - AZOBR_RS31280 0.80 +0.8 385,095 - AZOBR_RS31280 0.80 -3.2
Or see this region's nucleotide sequence