Experiment: Sisomicin 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS31265 and AZOBR_RS31270 are separated by 264 nucleotides AZOBR_RS31270 and AZOBR_RS31275 are separated by 41 nucleotides
AZOBR_RS31265: AZOBR_RS31265 - lysophospholipase, at 380,094 to 381,314
_RS31265
AZOBR_RS31270: AZOBR_RS31270 - aldose 1-epimerase, at 381,579 to 382,652
_RS31270
AZOBR_RS31275: AZOBR_RS31275 - altronate oxidoreductase, at 382,694 to 384,199
_RS31275
Position (kb) 381
382
383 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 380.738 kb on - strand, within AZOBR_RS31265 at 380.738 kb on - strand, within AZOBR_RS31265 at 380.783 kb on - strand, within AZOBR_RS31265 at 380.818 kb on + strand, within AZOBR_RS31265 at 380.818 kb on + strand, within AZOBR_RS31265 at 380.818 kb on + strand, within AZOBR_RS31265 at 380.818 kb on + strand, within AZOBR_RS31265 at 380.818 kb on + strand, within AZOBR_RS31265 at 380.819 kb on - strand, within AZOBR_RS31265 at 380.819 kb on - strand, within AZOBR_RS31265 at 380.819 kb on - strand, within AZOBR_RS31265 at 381.040 kb on + strand, within AZOBR_RS31265 at 381.085 kb on + strand, within AZOBR_RS31265 at 381.085 kb on + strand, within AZOBR_RS31265 at 381.086 kb on - strand, within AZOBR_RS31265 at 381.086 kb on - strand, within AZOBR_RS31265 at 381.175 kb on + strand, within AZOBR_RS31265 at 381.176 kb on - strand, within AZOBR_RS31265 at 381.178 kb on + strand, within AZOBR_RS31265 at 381.178 kb on + strand, within AZOBR_RS31265 at 381.256 kb on + strand at 381.256 kb on + strand at 381.256 kb on + strand at 381.256 kb on + strand at 381.256 kb on + strand at 381.256 kb on + strand at 381.257 kb on - strand at 381.257 kb on - strand at 381.257 kb on - strand at 381.257 kb on - strand at 381.257 kb on - strand at 381.589 kb on - strand at 381.693 kb on + strand, within AZOBR_RS31270 at 381.694 kb on - strand, within AZOBR_RS31270 at 381.763 kb on - strand, within AZOBR_RS31270 at 381.822 kb on + strand, within AZOBR_RS31270 at 381.981 kb on + strand, within AZOBR_RS31270 at 381.981 kb on + strand, within AZOBR_RS31270 at 381.981 kb on + strand, within AZOBR_RS31270 at 381.982 kb on - strand, within AZOBR_RS31270 at 381.982 kb on - strand, within AZOBR_RS31270 at 381.982 kb on - strand, within AZOBR_RS31270 at 381.982 kb on - strand, within AZOBR_RS31270 at 382.335 kb on + strand, within AZOBR_RS31270 at 382.456 kb on - strand, within AZOBR_RS31270 at 382.456 kb on - strand, within AZOBR_RS31270 at 382.516 kb on - strand, within AZOBR_RS31270 at 382.516 kb on - strand, within AZOBR_RS31270 at 382.516 kb on - strand, within AZOBR_RS31270 at 382.573 kb on + strand at 382.573 kb on + strand at 382.573 kb on + strand at 382.614 kb on + strand at 382.615 kb on - strand at 382.931 kb on + strand, within AZOBR_RS31275 at 382.932 kb on - strand, within AZOBR_RS31275 at 382.932 kb on - strand, within AZOBR_RS31275 at 382.932 kb on - strand, within AZOBR_RS31275 at 383.120 kb on + strand, within AZOBR_RS31275 at 383.120 kb on + strand, within AZOBR_RS31275 at 383.120 kb on + strand, within AZOBR_RS31275 at 383.120 kb on + strand, within AZOBR_RS31275 at 383.121 kb on - strand, within AZOBR_RS31275 at 383.379 kb on - strand, within AZOBR_RS31275 at 383.420 kb on + strand, within AZOBR_RS31275
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.01 mg/ml remove 380,738 - AZOBR_RS31265 0.53 -0.6 380,738 - AZOBR_RS31265 0.53 +0.6 380,783 - AZOBR_RS31265 0.56 -0.2 380,818 + AZOBR_RS31265 0.59 -0.3 380,818 + AZOBR_RS31265 0.59 +0.3 380,818 + AZOBR_RS31265 0.59 +0.3 380,818 + AZOBR_RS31265 0.59 -2.2 380,818 + AZOBR_RS31265 0.59 -3.4 380,819 - AZOBR_RS31265 0.59 -0.5 380,819 - AZOBR_RS31265 0.59 +0.5 380,819 - AZOBR_RS31265 0.59 +1.7 381,040 + AZOBR_RS31265 0.77 -0.8 381,085 + AZOBR_RS31265 0.81 -0.5 381,085 + AZOBR_RS31265 0.81 +0.2 381,086 - AZOBR_RS31265 0.81 +0.5 381,086 - AZOBR_RS31265 0.81 +0.5 381,175 + AZOBR_RS31265 0.89 -0.1 381,176 - AZOBR_RS31265 0.89 -2.2 381,178 + AZOBR_RS31265 0.89 +0.7 381,178 + AZOBR_RS31265 0.89 -0.5 381,256 + -2.9 381,256 + -1.2 381,256 + -4.8 381,256 + -3.9 381,256 + +0.2 381,256 + +1.8 381,257 - +0.5 381,257 - -0.5 381,257 - -1.2 381,257 - -0.1 381,257 - -1.7 381,589 - -2.9 381,693 + AZOBR_RS31270 0.11 -1.2 381,694 - AZOBR_RS31270 0.11 -0.9 381,763 - AZOBR_RS31270 0.17 +1.4 381,822 + AZOBR_RS31270 0.23 +1.1 381,981 + AZOBR_RS31270 0.37 +0.2 381,981 + AZOBR_RS31270 0.37 +0.9 381,981 + AZOBR_RS31270 0.37 -1.4 381,982 - AZOBR_RS31270 0.38 -2.2 381,982 - AZOBR_RS31270 0.38 +1.0 381,982 - AZOBR_RS31270 0.38 +0.4 381,982 - AZOBR_RS31270 0.38 +0.3 382,335 + AZOBR_RS31270 0.70 -0.5 382,456 - AZOBR_RS31270 0.82 +0.1 382,456 - AZOBR_RS31270 0.82 +0.5 382,516 - AZOBR_RS31270 0.87 -1.1 382,516 - AZOBR_RS31270 0.87 -3.0 382,516 - AZOBR_RS31270 0.87 -0.2 382,573 + -0.5 382,573 + +0.1 382,573 + +0.4 382,614 + -0.6 382,615 - -4.1 382,931 + AZOBR_RS31275 0.16 -2.5 382,932 - AZOBR_RS31275 0.16 -2.4 382,932 - AZOBR_RS31275 0.16 +0.5 382,932 - AZOBR_RS31275 0.16 -0.0 383,120 + AZOBR_RS31275 0.28 +0.3 383,120 + AZOBR_RS31275 0.28 -3.9 383,120 + AZOBR_RS31275 0.28 -0.5 383,120 + AZOBR_RS31275 0.28 +1.2 383,121 - AZOBR_RS31275 0.28 +0.2 383,379 - AZOBR_RS31275 0.45 -0.1 383,420 + AZOBR_RS31275 0.48 +1.7
Or see this region's nucleotide sequence