Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS31110

Experiment: Sisomicin 0.01 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS31105 and AZOBR_RS31110 are separated by 11 nucleotides AZOBR_RS31105: AZOBR_RS31105 - 8-amino-7-oxononanoate synthase, at 342,434 to 343,615 _RS31105 AZOBR_RS31110: AZOBR_RS31110 - hypothetical protein, at 343,627 to 344,415 _RS31110 Position (kb) 343 344 345Strain fitness (log2 ratio) -2 -1 0 1at 343.188 kb on - strand, within AZOBR_RS31105at 343.188 kb on - strand, within AZOBR_RS31105at 343.218 kb on - strand, within AZOBR_RS31105at 343.218 kb on - strand, within AZOBR_RS31105at 344.267 kb on + strand, within AZOBR_RS31110at 344.473 kb on - strandat 344.929 kb on + strandat 344.929 kb on + strandat 345.163 kb on + strandat 345.280 kb on + strandat 345.281 kb on - strandat 345.383 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Sisomicin 0.01 mg/ml
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343,188 - AZOBR_RS31105 0.64 -2.2
343,188 - AZOBR_RS31105 0.64 -0.8
343,218 - AZOBR_RS31105 0.66 +0.2
343,218 - AZOBR_RS31105 0.66 -0.4
344,267 + AZOBR_RS31110 0.81 +0.0
344,473 - +0.3
344,929 + +1.2
344,929 + +1.1
345,163 + -0.2
345,280 + +0.4
345,281 - -0.3
345,383 - +1.5

Or see this region's nucleotide sequence