Experiment: Sisomicin 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS30850 and AZOBR_RS30855 are separated by 388 nucleotides AZOBR_RS30855 and AZOBR_RS30860 overlap by 8 nucleotides
AZOBR_RS30850: AZOBR_RS30850 - hypothetical protein, at 287,430 to 289,880
_RS30850
AZOBR_RS30855: AZOBR_RS30855 - chemotaxis protein CheY, at 290,269 to 290,751
_RS30855
AZOBR_RS30860: AZOBR_RS30860 - sensor histidine kinase, at 290,744 to 293,035
_RS30860
Position (kb) 287
288
289
290 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 286.497 kb on + strand at 286.498 kb on - strand at 287.136 kb on + strand at 287.136 kb on + strand at 287.354 kb on + strand at 287.354 kb on + strand at 287.355 kb on - strand at 287.355 kb on - strand at 287.530 kb on + strand at 287.530 kb on + strand at 287.537 kb on - strand at 287.884 kb on + strand, within AZOBR_RS30850 at 287.885 kb on - strand, within AZOBR_RS30850 at 287.885 kb on - strand, within AZOBR_RS30850 at 287.885 kb on - strand, within AZOBR_RS30850 at 287.960 kb on - strand, within AZOBR_RS30850 at 287.960 kb on - strand, within AZOBR_RS30850 at 287.960 kb on - strand, within AZOBR_RS30850 at 288.086 kb on - strand, within AZOBR_RS30850 at 288.086 kb on - strand, within AZOBR_RS30850 at 288.086 kb on - strand, within AZOBR_RS30850 at 288.086 kb on - strand, within AZOBR_RS30850 at 288.445 kb on + strand, within AZOBR_RS30850 at 288.446 kb on - strand, within AZOBR_RS30850 at 288.877 kb on + strand, within AZOBR_RS30850 at 288.877 kb on + strand, within AZOBR_RS30850 at 288.878 kb on - strand, within AZOBR_RS30850 at 288.878 kb on - strand, within AZOBR_RS30850 at 288.965 kb on - strand, within AZOBR_RS30850 at 289.243 kb on + strand, within AZOBR_RS30850 at 289.360 kb on + strand, within AZOBR_RS30850 at 289.361 kb on - strand, within AZOBR_RS30850 at 289.361 kb on - strand, within AZOBR_RS30850 at 289.381 kb on + strand, within AZOBR_RS30850 at 289.381 kb on + strand, within AZOBR_RS30850 at 289.381 kb on + strand, within AZOBR_RS30850 at 289.381 kb on + strand, within AZOBR_RS30850 at 289.381 kb on + strand, within AZOBR_RS30850 at 289.381 kb on + strand, within AZOBR_RS30850 at 289.382 kb on - strand, within AZOBR_RS30850 at 289.382 kb on - strand, within AZOBR_RS30850 at 289.384 kb on + strand, within AZOBR_RS30850 at 289.523 kb on - strand, within AZOBR_RS30850 at 289.804 kb on + strand at 289.805 kb on - strand at 289.805 kb on - strand at 289.943 kb on - strand at 289.943 kb on - strand at 289.943 kb on - strand at 290.127 kb on + strand at 290.429 kb on + strand, within AZOBR_RS30855 at 290.429 kb on + strand, within AZOBR_RS30855 at 290.430 kb on - strand, within AZOBR_RS30855 at 290.430 kb on - strand, within AZOBR_RS30855 at 290.802 kb on + strand at 290.802 kb on + strand at 290.803 kb on - strand at 290.803 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.01 mg/ml remove 286,497 + +0.8 286,498 - +0.0 287,136 + +1.0 287,136 + +0.1 287,354 + +0.3 287,354 + +0.8 287,355 - -1.0 287,355 - -0.7 287,530 + +0.1 287,530 + -1.7 287,537 - -0.3 287,884 + AZOBR_RS30850 0.19 -0.4 287,885 - AZOBR_RS30850 0.19 +1.7 287,885 - AZOBR_RS30850 0.19 +0.2 287,885 - AZOBR_RS30850 0.19 +1.5 287,960 - AZOBR_RS30850 0.22 +0.4 287,960 - AZOBR_RS30850 0.22 +0.6 287,960 - AZOBR_RS30850 0.22 -0.6 288,086 - AZOBR_RS30850 0.27 -3.3 288,086 - AZOBR_RS30850 0.27 +0.9 288,086 - AZOBR_RS30850 0.27 +0.6 288,086 - AZOBR_RS30850 0.27 +1.0 288,445 + AZOBR_RS30850 0.41 +1.3 288,446 - AZOBR_RS30850 0.41 +1.3 288,877 + AZOBR_RS30850 0.59 +0.5 288,877 + AZOBR_RS30850 0.59 +0.3 288,878 - AZOBR_RS30850 0.59 -0.3 288,878 - AZOBR_RS30850 0.59 -2.5 288,965 - AZOBR_RS30850 0.63 +0.3 289,243 + AZOBR_RS30850 0.74 -0.0 289,360 + AZOBR_RS30850 0.79 +1.3 289,361 - AZOBR_RS30850 0.79 -2.7 289,361 - AZOBR_RS30850 0.79 +1.1 289,381 + AZOBR_RS30850 0.80 +0.8 289,381 + AZOBR_RS30850 0.80 -3.3 289,381 + AZOBR_RS30850 0.80 -0.2 289,381 + AZOBR_RS30850 0.80 -1.5 289,381 + AZOBR_RS30850 0.80 +0.1 289,381 + AZOBR_RS30850 0.80 +0.3 289,382 - AZOBR_RS30850 0.80 -0.5 289,382 - AZOBR_RS30850 0.80 -0.5 289,384 + AZOBR_RS30850 0.80 -0.0 289,523 - AZOBR_RS30850 0.85 -0.4 289,804 + -4.0 289,805 - -2.4 289,805 - -0.7 289,943 - +0.5 289,943 - -0.1 289,943 - +0.3 290,127 + +0.5 290,429 + AZOBR_RS30855 0.33 +0.2 290,429 + AZOBR_RS30855 0.33 +0.9 290,430 - AZOBR_RS30855 0.33 +1.3 290,430 - AZOBR_RS30855 0.33 +0.4 290,802 + +0.4 290,802 + +1.6 290,803 - +0.6 290,803 - -0.5
Or see this region's nucleotide sequence